MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-217-v1

Family name MIR-217 (all species)
Seed ACUGCAU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-217
Paralogues Xtr-Mir-217-v2 
Orthologues Aca-Mir-217-v1  Ami-Mir-217-v1  Bfl-Mir-217  Bla-Mir-217  Bta-Mir-217-v1  Cfa-Mir-217-v1  Cja-Mir-217-v1  Cli-Mir-217-v1  Cmi-Mir-217  Cpi-Mir-217-v1  Cpo-Mir-217-v1  Dno-Mir-217-v1  Dre-Mir-217-v1  Eca-Mir-217-v1  Ete-Mir-217-v1  Gga-Mir-217-v1  Gja-Mir-217-v1  Gmo-Mir-217  Hsa-Mir-217-v1  Laf-Mir-217  Lch-Mir-217  Loc-Mir-217  Mal-Mir-217  Mdo-Mir-217  Mml-Mir-217-v1  Mmr-Mir-217  Mmu-Mir-217-v1  Mun-Mir-217-v1  Neu-Mir-217-v1  Oan-Mir-217-v1  Ocu-Mir-217-v1  Pab-Mir-217-v1  Pbv-Mir-217-v1  Rno-Mir-217-v1  Sha-Mir-217-v1  Spt-Mir-217  Sto-Mir-217-v1  Tgu-Mir-217-v1  Tni-Mir-217 
Node of Origin (locus) Chordata
Node of Origin (family) Chordata
Genome context
(xenTro9_add)
chr5: 26048673-26048731 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-217-v1)
Mir-217-v2 chr5: 26048672-26048732 [-] UCSC Ensembl
Mir-217-v1 chr5: 26048673-26048731 [-] UCSC Ensembl
Mir-216-P2b chr5: 26049038-26049099 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUGAAAUGCAAUUAUUUUGAUGUUGUAGAUACUGCAUCAGGAACUGAUUGGAUCCCAGGGAGCAGCCAUCAGUUCCUAAUGCACUGCCUUCGGCAUCUAAACAAACAUCAGUCUGUUU
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Structure
        10          20        30        40        50         
GGUGAAAUGCAAUUAUUUU--|      U  A  C     C          U  AUCCCA 
                     GAUGUUG AG UA UGCAU AGGAACUGAU GG      G
                     CUACGGC UC GU ACGUA UCCUUGACUA CC      G
UUUGUCUGACUACAAACAAAU^      U  C  C     A          -  GACGAG 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-217-v1_5p

mirBase accessionMIMAT0003630
Sequence
0- UACUGCAUCAGGAACUGAUUGGA -23
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Proposed targets TargetScanVert: xtr-miR-217
Star sequence

Xtr-Mir-217-v1_3p*

mirBase accessionNone
Sequence
37- CAUCAGUUCCUAAUGCACUGCC -59
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