MirGeneDB 3.0
MirGeneDB ID

Bla-Mir-217

Family name MIR-217 (all species)
Seed AAUCUGU
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues
Orthologues Aca-Mir-217-v1  Aca-Mir-217-v2  Ami-Mir-217-v1  Ami-Mir-217-v2  Bfl-Mir-217  Bta-Mir-217-v1  Bta-Mir-217-v2  Cfa-Mir-217-v1  Cfa-Mir-217-v2  Cja-Mir-217-v1  Cja-Mir-217-v2  Cli-Mir-217-v1  Cli-Mir-217-v2  Cmi-Mir-217  Cpi-Mir-217-v1  Cpi-Mir-217-v2  Cpo-Mir-217-v1  Cpo-Mir-217-v2  Dno-Mir-217-v1  Dno-Mir-217-v2  Dre-Mir-217-v1  Dre-Mir-217-v2  Ebu-Mir-217-P1-v1  Ebu-Mir-217-P1-v2  Ebu-Mir-217-P2-v1  Ebu-Mir-217-P2-v2  Eca-Mir-217-v1  Eca-Mir-217-v2  Ete-Mir-217-v1  Ete-Mir-217-v2  Gga-Mir-217-v1  Gga-Mir-217-v2  Gja-Mir-217-v1  Gja-Mir-217-v2  Gmo-Mir-217  Hsa-Mir-217-v1  Hsa-Mir-217-v2  Laf-Mir-217  Lch-Mir-217  Loc-Mir-217  Mal-Mir-217  Mdo-Mir-217  Mml-Mir-217-v1  Mml-Mir-217-v2  Mmr-Mir-217  Mmu-Mir-217-v1  Mmu-Mir-217-v2  Mun-Mir-217-v1  Mun-Mir-217-v2  Neu-Mir-217-v1  Neu-Mir-217-v2  Oan-Mir-217-v1  Oan-Mir-217-v2  Ocu-Mir-217-v1  Ocu-Mir-217-v2  Pab-Mir-217-v1  Pab-Mir-217-v2  Pbv-Mir-217-v1  Pbv-Mir-217-v2  Pma-Mir-217-P1  Pma-Mir-217-P2-v1  Pma-Mir-217-P2-v2  Rno-Mir-217-v1  Rno-Mir-217-v2  Sha-Mir-217-v1  Sha-Mir-217-v2  Spt-Mir-217  Sto-Mir-217-v1  Sto-Mir-217-v2  Tgu-Mir-217-v1  Tgu-Mir-217-v2  Tni-Mir-217  Xla-Mir-217-P3-v1  Xla-Mir-217-P3-v2  Xla-Mir-217-P4-v1  Xla-Mir-217-P4-v2  Xtr-Mir-217-v1  Xtr-Mir-217-v2 
Node of Origin (locus) Chordata
Node of Origin (family) Chordata
Genome context
(BraLan2)		 Sc0000230: 138105-138161 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCUAUAUCUGCUCUUAUGAGGCACUGGGACUACUGCAUCAGGAACUGAUUGGAUGGGAUACAAAUCAAUCUGUUCCUCAUGCAUGGCUCACAGUGCUGUCUUGUACAGCCUAUUUAG
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Structure
        10         20         30        40        50        
GCUAUAUCUGCUCUUAUGA-       -|GA   C     C      U      AUGGG 
                    GGCACUG G  CUA UGCAU AGGAAC GAUUGG     A
                    UCGUGAC C  GGU ACGUA UCCUUG CUAACU     U
GAUUUAUCCGACAUGUUCUG       A^UC   -     C      U      AAACA 
     110       100        90         80        70        60
Deep sequencing
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CommentAlthough the highest 3p reads has a templated 3' most uridine this gives the Drosha cut a 3-nt offset suggesting that the 3p arm might be monouridylated.
3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
-   +
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Star sequence

Bla-Mir-217_5p*
mirBase accessionNone
Sequence 
0- UACUGCAUCAGGAACUGAUUGGA -23
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Mature sequence

Bla-Mir-217_3p
mirBase accessionNone
Sequence 
35- CAAUCUGUUCCUCAUGCAUGGC -57
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