MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-217-v2

Family name MIR-217 (all species)
Seed UACUGCA
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-217-v1 
Orthologues Aca-Mir-217-v2  Ami-Mir-217-v2  Bfl-Mir-217  Bla-Mir-217  Bta-Mir-217-v2  Cfa-Mir-217-v2  Cli-Mir-217-v2  Cmi-Mir-217  Cpi-Mir-217-v2  Cpo-Mir-217-v2  Dno-Mir-217-v2  Dre-Mir-217-v2  Eca-Mir-217-v2  Ete-Mir-217-v2  Gga-Mir-217-v2  Gja-Mir-217-v2  Gmo-Mir-217  Hsa-Mir-217-v2  Laf-Mir-217  Lch-Mir-217  Loc-Mir-217  Mal-Mir-217  Mdo-Mir-217  Mml-Mir-217-v2  Mmr-Mir-217  Mmu-Mir-217-v2  Mun-Mir-217-v2  Neu-Mir-217-v2  Oan-Mir-217-v2  Ocu-Mir-217-v2  Pab-Mir-217-v2  Pbv-Mir-217-v2  Rno-Mir-217-v2  Sha-Mir-217-v2  Spt-Mir-217  Sto-Mir-217-v2  Tgu-Mir-217-v2  Tni-Mir-217  Xtr-Mir-217-v2 
Node of Origin (locus) Chordata
Node of Origin (family) Chordata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021928.1: 56264065-56264125 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACGAUUAUUACAUAGUUUUUGAUGUCGCAGAUACUGCAUCAGGAACUGAUUGGAUAAGAAUCAGUCACCAUCAGUUCCUAAUGCAUUGCCUUCAGCAUCUAAACAAGCAUCAGUAAAUACC
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Structure
        10        20          30        40        50        60
ACGAUUAUUACAUAGUUUUU--|    CGC  A  C     C          U  AUAAGA 
                      GAUGU   AG UA UGCAU AGGAACUGAU GG      A
                      CUACG   UC GU ACGUA UCCUUGACUA CC      U
CCAUAAAUGACUACGAACAAAU^    ACU  C  U     A          -  ACUGAC 
 .       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cja-Mir-217-v2_5p (predicted)
mirBase accessionNone
Sequence 
0- AUACUGCAUCAGGAACUGAUUGG -23
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Star sequence

Cja-Mir-217-v2_3p* (predicted)
mirBase accessionNone
Sequence 
39- AUCAGUUCCUAAUGCAUUGCCU -61
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