| MirGeneDB ID | Cja-Mir-217-v2 |
|---|---|
| Family name | MIR-217 (all species) |
| Seed | UACUGCA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-217-v1 |
| Orthologues | Aca-Mir-217-v2 Ami-Mir-217-v2 Bfl-Mir-217 Bla-Mir-217 Bta-Mir-217-v2 Cfa-Mir-217-v2 Cli-Mir-217-v2 Cmi-Mir-217 Cpi-Mir-217-v2 Cpo-Mir-217-v2 Dno-Mir-217-v2 Dre-Mir-217-v2 Eca-Mir-217-v2 Ete-Mir-217-v2 Gga-Mir-217-v2 Gja-Mir-217-v2 Gmo-Mir-217 Hsa-Mir-217-v2 Laf-Mir-217 Lch-Mir-217 Loc-Mir-217 Mal-Mir-217 Mdo-Mir-217 Mml-Mir-217-v2 Mmr-Mir-217 Mmu-Mir-217-v2 Mun-Mir-217-v2 Neu-Mir-217-v2 Oan-Mir-217-v2 Ocu-Mir-217-v2 Pab-Mir-217-v2 Pbv-Mir-217-v2 Rno-Mir-217-v2 Sha-Mir-217-v2 Spt-Mir-217 Sto-Mir-217-v2 Tgu-Mir-217-v2 Tni-Mir-217 Xtr-Mir-217-v2 |
| Node of Origin (locus) | Chordata |
| Node of Origin (family) | Chordata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021928.1: 56264065-56264125 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | ACGAUUAUUACAUAGUUUUUGAUGUCGCAGAUACUGCAUCAGGAACUGAUUGGAUAAGAAUCAGUCACCAUCAGUUCCUAAUGCAUUGCCUUCAGCAUCUAAACAAGCAUCAGUAAAUACCGet precursor sequence |
| Structure | 10 20 30 40 50 60 ACGAUUAUUACAUAGUUUUU--| CGC A C C U AUAAGA GAUGU AG UA UGCAU AGGAACUGAU GG A CUACG UC GU ACGUA UCCUUGACUA CC U CCAUAAAUGACUACGAACAAAU^ ACU C U A - ACUGAC . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-217-v2_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AUACUGCAUCAGGAACUGAUUGG -23
Get sequence
|
| Star sequence | Cja-Mir-217-v2_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- AUCAGUUCCUAAUGCAUUGCCU -61
Get sequence
|
