Mir-217-v2

MirGeneDB ID

Mmu-Mir-217-v2

Family name

MIR-217 (all species)

Seed

UACUGCA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-217

Paralogues

Mmu-Mir-217-v1

Orthologues

Aca-Mir-217-v2 Ami-Mir-217-v2 Bfl-Mir-217 Bla-Mir-217 Bta-Mir-217-v2 Cfa-Mir-217-v2 Cli-Mir-217-v2 Cmi-Mir-217 Cpi-Mir-217-v2 Cpo-Mir-217-v2 Dno-Mir-217-v2 Dre-Mir-217-v2 Ete-Mir-217-v2 Gga-Mir-217-v2 Gja-Mir-217-v2 Gmo-Mir-217 Hsa-Mir-217-v2 Lch-Mir-217 Loc-Mir-217 Mal-Mir-217 Mdo-Mir-217 Mml-Mir-217-v2 Mun-Mir-217-v2 Oan-Mir-217-v2 Ocu-Mir-217-v2 Pbv-Mir-217-v2 Rno-Mir-217-v2 Sha-Mir-217-v2 Spt-Mir-217 Sto-Mir-217-v2 Tgu-Mir-217-v2 Tni-Mir-217 Xtr-Mir-217-v2

Node of Origin (locus)

Chordata

Node of Origin (family)

Chordata

Genome context
(mm10)

chr11: 28763760-28763820 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-217-v2)

Mir-216-P2a chr11: 28746204-28746265 [+] UCSC Ensembl
Mir-216-P2b chr11: 28757018-28757079 [+] UCSC Ensembl
Mir-217-v2 chr11: 28763760-28763820 [+] UCSC Ensembl
Mir-217-v1 chr11: 28763761-28763819 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACAUAGUCAUUACAGUUUUUGAUGUUGCAGAUACUGCAUCAGGAACUGACUGGAUAAGACUUAAUCCCCAUCAGUUCCUAAUGCAUUGCCUUCAGCAUCUAAACAACCACCAGCAAACACC

Get precursor sequence

Structure

        10        20          30        40        50        60
ACAUAGUCAUUACAGUUUUU--|      C  A  C     C         C   AUAAGA 
                      GAUGUUG AG UA UGCAU AGGAACUGA UGG      C
                      CUACGAC UC GU ACGUA UCCUUGACU ACC      U
CCACAAACGACCACCAACAAAU^      U  C  U     A         -   CCUAAU 
 .       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

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Mature sequence

Mmu-Mir-217-v2_5p

mirBase accession

MIMAT0000679

Sequence

0- AUACUGCAUCAGGAACUGACUGG -23

Get sequence

Proposed targets

microrna.org: MIMAT0000679
TargetScanVert: mmu-miR-217-5p
miRDB: MIMAT0000679

Star sequence

Mmu-Mir-217-v2_3p*

mirBase accession

MIMAT0017072

Sequence

39- AUCAGUUCCUAAUGCAUUGCCU -61

Get sequence

Proposed targets

TargetScanVert: mmu-miR-217-3p
miRDB: MIMAT0017072