MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-217-v2

Family name MIR-217 (all species)
Seed UACUGCA
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-217
Paralogues Tgu-Mir-217-v1 
Orthologues Aca-Mir-217-v2  Ami-Mir-217-v2  Bfl-Mir-217  Bla-Mir-217  Bta-Mir-217-v2  Cfa-Mir-217-v2  Cli-Mir-217-v2  Cmi-Mir-217  Cpi-Mir-217-v2  Cpo-Mir-217-v2  Dno-Mir-217-v2  Dre-Mir-217-v2  Ete-Mir-217-v2  Gga-Mir-217-v2  Gja-Mir-217-v2  Gmo-Mir-217  Hsa-Mir-217-v2  Lch-Mir-217  Loc-Mir-217  Mal-Mir-217  Mdo-Mir-217  Mml-Mir-217-v2  Mmu-Mir-217-v2  Mun-Mir-217-v2  Oan-Mir-217-v2  Ocu-Mir-217-v2  Pbv-Mir-217-v2  Rno-Mir-217-v2  Sha-Mir-217-v2  Spt-Mir-217  Sto-Mir-217-v2  Tni-Mir-217  Xtr-Mir-217-v2 
Node of Origin (locus) Chordata
Node of Origin (family) Chordata
Genome context
(TaeGut1_add)
3: 86148043-86148103 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-217-v2)
Mir-217-v2 3: 86148043-86148103 [-] UCSC Ensembl
Mir-217-v1 3: 86148044-86148102 [-] UCSC Ensembl
Mir-216-P2b 3: 86150167-86150227 [-] UCSC Ensembl
Mir-216-P2a 3: 86155263-86155324 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAACCACUGCAGAGUUUUUGAUGUCGCAGAUACUGCAUCAGGAACUGAUUGGAUAAUAAUCACUCACCAUCAGUUCCUAAUGCAUUGCCUUCAGCAUCUAAACAAGCAUCCAGGAGUUCC
Get precursor sequence
Structure
        10        20          30        40        50        60
AAAACCACUGCAGAGUUUUU--|    CGC  A  C     C          U  AUAAUA 
                      GAUGU   AG UA UGCAU AGGAACUGAU GG      A
                      CUACG   UC GU ACGUA UCCUUGACUA CC      U
CCUUGAGGACCUACGAACAAAU^    ACU  C  U     A          -  ACUCAC 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-217-v2_5p

mirBase accessionMIMAT0014579
Sequence
0- AUACUGCAUCAGGAACUGAUUGG -23
Get sequence
Star sequence

Tgu-Mir-217-v2_3p*

mirBase accessionMIMAT0027010
Sequence
39- AUCAGUUCCUAAUGCAUUGCCU -61
Get sequence