Mir-216-P2b

MirGeneDB ID

Mmu-Mir-216-P2b

Family name

MIR-216 (all species)

Seed

AAUCUCA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-216a

Paralogues

Mmu-Mir-216-P2a

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2b Ami-Mir-216-P2b Asu-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2b Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2b Cgi-Mir-216-P2 Cli-Mir-216-P2b Cmi-Mir-216-P2b Cpi-Mir-216-P2b Cpo-Mir-216-P2b Dan-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2b Dpu-Mir-216-P2 Dre-Mir-216-P2b Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2b1 Efe-Mir-216-P2 Ete-Mir-216-P2b Gga-Mir-216-P2b Gja-Mir-216-P2b Gmo-Mir-216-P2b Hme-Mir-216-P2 Hsa-Mir-216-P2b Isc-Mir-216-P2 Lch-Mir-216-P2b Lgi-Mir-216-P2 Loc-Mir-216-P2b Mal-Mir-216-P2b Mdo-Mir-216-P2b Mml-Mir-216-P2b Mun-Mir-216-P2b Oan-Mir-216-P2b Ocu-Mir-216-P2b Pbv-Mir-216-P2b Pma-Mir-216-P2b1 Rno-Mir-216-P2b Sha-Mir-216-P2b Spt-Mir-216-P2b Sto-Mir-216-P2b Tca-Mir-216-P2 Tgu-Mir-216-P2b Tni-Mir-216-P2b Xla-Mir-216-P2b3 Xla-Mir-216-P2b4 Xtr-Mir-216-P2b

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(mm10)

chr11: 28757018-28757079 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2b)

Mir-216-P2a chr11: 28746204-28746265 [+] UCSC Ensembl
Mir-216-P2b chr11: 28757018-28757079 [+] UCSC Ensembl
Mir-217-v2 chr11: 28763760-28763820 [+] UCSC Ensembl
Mir-217-v1 chr11: 28763761-28763819 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGUCCAACCUGGAUGGCUAUGAGUUGGUUUAAUCUCAGCUGGCAACUGUGAGAUGUCCCUAUCAUUCCUCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCAAUUUCCUUGACCUUGUGG

Get precursor sequence

Structure

        10           20        30        40        50        60 
AGGUCCAACCUGGAUGG---| A  AG     U         CU   A        AUGUCCC 
                    CU UG  UUGGU UAAUCUCAG  GGC ACUGUGAG       \
                    GA AC  AAUCG AUUAGGGUC  CUG UGACACUC       U
GGUGUUCCAGUUCCUUUAAC^ G  A-     U         U-   G        CUUACUA 
120       110       100         90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

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Mature sequence

Mmu-Mir-216-P2b_5p

mirBase accession

MIMAT0000662

Sequence

0- UAAUCUCAGCUGGCAACUGUGAG -23

Get sequence

Proposed targets

microrna.org: MIMAT0000662
TargetScanVert: mmu-miR-216a-5p
miRDB: MIMAT0000662

Star sequence

Mmu-Mir-216-P2b_3p*

mirBase accession

MIMAT0017054

Sequence

40- CACAGUGGUCUCUGGGAUUAUG -62

Get sequence

Proposed targets

TargetScanVert: mmu-miR-216a-3p
miRDB: MIMAT0017054