Mir-216-P2b

MirGeneDB ID

Eca-Mir-216-P2b

Family name

MIR-216 (all species)

Seed

AAUCUCA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-216a

Paralogues

Eca-Mir-216-P2a

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2b Aga-Mir-216-P2 Ami-Mir-216-P2b Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2b Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2b Cja-Mir-216-P2b Cli-Mir-216-P2b Cmi-Mir-216-P2b Cpi-Mir-216-P2b Cpo-Mir-216-P2b Csc-Mir-216-P2 Dan-Mir-216-P2 Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2b Dpu-Mir-216-P2 Dre-Mir-216-P2b Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2b1 Ete-Mir-216-P2b Gga-Mir-216-P2b Gja-Mir-216-P2b Gmo-Mir-216-P2b Hme-Mir-216-P2 Hsa-Mir-216-P2b Isc-Mir-216-P2 Laf-Mir-216-P2b Lch-Mir-216-P2b Loc-Mir-216-P2b Mal-Mir-216-P2b Mdo-Mir-216-P2b Mml-Mir-216-P2b Mmr-Mir-216-P2b Mmu-Mir-216-P2b Mun-Mir-216-P2b Neu-Mir-216-P2b Oan-Mir-216-P2b Ocu-Mir-216-P2b Pab-Mir-216-P2b Pbv-Mir-216-P2b Pca-Mir-216-P2 Pma-Mir-216-P2b1 Rno-Mir-216-P2b Sha-Mir-216-P2b Spt-Mir-216-P2b Sto-Mir-216-P2b Tca-Mir-216-P2 Tgu-Mir-216-P2b Tni-Mir-216-P2b Tur-Mir-216-P2 Xla-Mir-216-P2b3 Xla-Mir-216-P2b4 Xtr-Mir-216-P2b

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(GCA_002863925.1_EquCab3.0)

CM009162.1: 45359145-45359204 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2b)

Mir-216-P2a CM009162.1: 45348559-45348620 [+] UCSC Ensembl
Mir-216-P2b CM009162.1: 45359145-45359204 [+] UCSC Ensembl
Mir-217-v2 CM009162.1: 45366334-45366394 [+] UCSC Ensembl
Mir-217-v1 CM009162.1: 45366335-45366393 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGAUCUAACCUGGAUGGCUGUGAGUUGGUUUAAUCUCAGCUGGCAACUGUGAGAUGUUCAUAAAUCCCCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCAAUUUCCUUGCCCUCAAGG

Get precursor sequence

Structure

        10             20        30        40        50          
AGAUCUAACCUGGAUGG-----|   GAG     U         CU   A      AGAUGUUC 
                      CUGU   UUGGU UAAUCUCAG  GGC ACUGUG        \
                      GACA   AAUCG AUUAGGGUC  CUG UGACAC        A
GGAACUCCCGUUCCUUUAACGA^   ---     U         U-   G      CCCUAAAU 
.       110       100           90        80         70

Deep sequencing

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3' NTU

Unknown

Motifs

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-216-P2b_5p

mirBase accession

MIMAT0013072

Sequence

0- UAAUCUCAGCUGGCAACUGUGAG -23

Get sequence

Star sequence

Eca-Mir-216-P2b_3p* (predicted)

mirBase accession

None

Sequence

38- CACAGUGGUCUCUGGGAUUAUG -60

Get sequence