Mir-216-P2b

MirGeneDB ID

Ocu-Mir-216-P2b

Family name

MIR-216 (all species)

Seed

AAUCUCA

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

ocu-mir-216a

Paralogues

Ocu-Mir-216-P2a

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2b Aga-Mir-216-P2 Ami-Mir-216-P2b Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2b Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2b Cja-Mir-216-P2b Cli-Mir-216-P2b Cmi-Mir-216-P2b Cpi-Mir-216-P2b Cpo-Mir-216-P2b Csc-Mir-216-P2 Dan-Mir-216-P2 Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2b Dpu-Mir-216-P2 Dre-Mir-216-P2b Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2b1 Eca-Mir-216-P2b Ete-Mir-216-P2b Gga-Mir-216-P2b Gja-Mir-216-P2b Gmo-Mir-216-P2b Hme-Mir-216-P2 Hsa-Mir-216-P2b Isc-Mir-216-P2 Laf-Mir-216-P2b Lch-Mir-216-P2b Loc-Mir-216-P2b Mal-Mir-216-P2b Mdo-Mir-216-P2b Mml-Mir-216-P2b Mmr-Mir-216-P2b Mmu-Mir-216-P2b Mun-Mir-216-P2b Neu-Mir-216-P2b Oan-Mir-216-P2b Pab-Mir-216-P2b Pbv-Mir-216-P2b Pca-Mir-216-P2 Pma-Mir-216-P2b1 Rno-Mir-216-P2b Sha-Mir-216-P2b Spt-Mir-216-P2b Sto-Mir-216-P2b Tca-Mir-216-P2 Tgu-Mir-216-P2b Tni-Mir-216-P2b Tur-Mir-216-P2 Xla-Mir-216-P2b3 Xla-Mir-216-P2b4 Xtr-Mir-216-P2b

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(oryCun2_add)

chr2: 130101540-130101601 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2b)

Mir-216-P2a chr2: 130089612-130089673 [+] UCSC Ensembl
Mir-216-P2b chr2: 130101540-130101601 [+] UCSC Ensembl
Mir-217-v2 chr2: 130108838-130108898 [+] UCSC Ensembl
Mir-217-v1 chr2: 130108839-130108897 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGUUUAACCUGAAUGGCUGUGAGUUGGCUUAAUCUCAGCUGGCAACUGUGAGAUAUUCAUACAAUCCCUCACAGUGGUCUCUGGGGUUAUGCUAAACAGAGCAAUUUCCUUGCCCUUGUGG

Get precursor sequence

Structure

        10             20        30        40        50        60 
AGGUUUAACCUGAAUGG-----|   GAG     U         CU   A        AUAUUCA 
                      CUGU   UUGGC UAAUCUCAG  GGC ACUGUGAG       \
                      GACA   AAUCG AUUGGGGUC  CUG UGACACUC       U
GGUGUUCCCGUUCCUUUAACGA^   ---     U         U-   G        CCUAACA 
120       110       100           90         80        70