MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-216-P2b1

Family name MIR-216 (all species)
Seed AAUCUCA
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-216a
Paralogues Pma-Mir-216-P2a1  Pma-Mir-216-P2a2 
Orthologues Aae-Mir-216-P2  Aca-Mir-216-P2b  Aga-Mir-216-P2  Ami-Mir-216-P2b  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Bta-Mir-216-P2b  Cbr-Mir-216-P2  Cel-Mir-216-P2  Cfa-Mir-216-P2b  Cja-Mir-216-P2b  Cli-Mir-216-P2b  Cmi-Mir-216-P2b  Cpi-Mir-216-P2b  Cpo-Mir-216-P2b  Csc-Mir-216-P2  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dno-Mir-216-P2b  Dpu-Mir-216-P2  Dre-Mir-216-P2b  Dsi-Mir-216-P2  Dya-Mir-216-P2  Ebu-Mir-216-P2b1  Eca-Mir-216-P2b  Ete-Mir-216-P2b  Gga-Mir-216-P2b  Gja-Mir-216-P2b  Gmo-Mir-216-P2b  Hme-Mir-216-P2  Hsa-Mir-216-P2b  Isc-Mir-216-P2  Laf-Mir-216-P2b  Lch-Mir-216-P2b  Loc-Mir-216-P2b  Mal-Mir-216-P2b  Mdo-Mir-216-P2b  Mml-Mir-216-P2b  Mmr-Mir-216-P2b  Mmu-Mir-216-P2b  Mun-Mir-216-P2b  Neu-Mir-216-P2b  Oan-Mir-216-P2b  Ocu-Mir-216-P2b  Pab-Mir-216-P2b  Pbv-Mir-216-P2b  Pca-Mir-216-P2  Rno-Mir-216-P2b  Sha-Mir-216-P2b  Spt-Mir-216-P2b  Sto-Mir-216-P2b  Tca-Mir-216-P2  Tgu-Mir-216-P2b  Tni-Mir-216-P2b  Tur-Mir-216-P2  Xtr-Mir-216-P2b 
Node of Origin (locus) Cyclostomata
Node of Origin (family) Nephrozoa
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046074.1: 1952348-1952411 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-216-P2b1)		 Mir-217-P1 NC_046074.1: 1950981-1951039 [-] UCSC Ensembl
Mir-216-P2b1 NC_046074.1: 1952348-1952411 [-] UCSC Ensembl
Mir-216-P2a1 NC_046074.1: 1955059-1955119 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUGGUGAAGGCUCUGCUGUGAUCUCGGCCCAAUCUCAGCUGGCAACUGUGAGUGCUGUGUUGGGAAUUGCCCACGGGAGUCACUGGGAUUAGGCUGUGAGCAGCACUUUGUGCAAAUCAACUG
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Structure
        10         20         30        40        50        60  
GCUGGUGAAGGCUCUGC-   GA-| U     C        C    AA     A UGCUGUGU 
                  UGU   UC CGGCC AAUCUCAG UGGC  CUGUG G        \
                  ACG   AG GUCGG UUAGGGUC ACUG  GGCAC C        U
GUCAACUAAACGUGUUUC   ACG^ U     A        -    AG     C GUUAAGGG 
  120       110       100        90         80        70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-216-P2b1_5p
mirBase accessionMIMAT0019525
Sequence 
0- CAAUCUCAGCUGGCAACUGUGAG -23
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Star sequence

Pma-Mir-216-P2b1_3p*
mirBase accessionMIMAT0019526
Sequence 
42- CACGGGAGUCACUGGGAUUAGG -64
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