MirGeneDB 3.0

MirGeneDB ID

Oan-Mir-216-P2b

Family name MIR-216 (all species)
Seed AAUCUCA
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-216a
Paralogues Oan-Mir-216-P2a 
Orthologues Aae-Mir-216-P2  Aca-Mir-216-P2b  Aga-Mir-216-P2  Ami-Mir-216-P2b  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Bta-Mir-216-P2b  Cbr-Mir-216-P2  Cel-Mir-216-P2  Cfa-Mir-216-P2b  Cja-Mir-216-P2b  Cli-Mir-216-P2b  Cmi-Mir-216-P2b  Cpi-Mir-216-P2b  Cpo-Mir-216-P2b  Csc-Mir-216-P2  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dno-Mir-216-P2b  Dpu-Mir-216-P2  Dre-Mir-216-P2b  Dsi-Mir-216-P2  Dya-Mir-216-P2  Ebu-Mir-216-P2b1  Eca-Mir-216-P2b  Ete-Mir-216-P2b  Gga-Mir-216-P2b  Gja-Mir-216-P2b  Gmo-Mir-216-P2b  Hme-Mir-216-P2  Hsa-Mir-216-P2b  Isc-Mir-216-P2  Laf-Mir-216-P2b  Lch-Mir-216-P2b  Loc-Mir-216-P2b  Mal-Mir-216-P2b  Mdo-Mir-216-P2b  Mml-Mir-216-P2b  Mmr-Mir-216-P2b  Mmu-Mir-216-P2b  Mun-Mir-216-P2b  Neu-Mir-216-P2b  Ocu-Mir-216-P2b  Pab-Mir-216-P2b  Pbv-Mir-216-P2b  Pca-Mir-216-P2  Pma-Mir-216-P2b1  Rno-Mir-216-P2b  Sha-Mir-216-P2b  Spt-Mir-216-P2b  Sto-Mir-216-P2b  Tca-Mir-216-P2  Tgu-Mir-216-P2b  Tni-Mir-216-P2b  Tur-Mir-216-P2  Xla-Mir-216-P2b3  Xla-Mir-216-P2b4  Xtr-Mir-216-P2b 
Node of Origin (locus) Vertebrata
Node of Origin (family) Nephrozoa
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041736.1: 56809006-56809067 [+]
Clustered miRNAs
(< 50kb from Mir-216-P2b)
Mir-216-P2a NC_041736.1: 56800547-56800608 [+]
Mir-216-P2b NC_041736.1: 56809006-56809067 [+]
Mir-217-v2 NC_041736.1: 56814320-56814380 [+]
Mir-217-v1 NC_041736.1: 56814321-56814379 [+]
Precursor
(pre-Mir +30nt flank)
AGAUCGACAUCGGAUGGCUGUGAAUCGGCUUAAUCUCAGCUGGCAACUGUGAGAUGCUAACCAAUUCUCCCACAGUGGCAUCUGGGAUUAUGCUAAACACAGCAAUUUCUUACCUCUGAGAA
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Structure
        10           20        30        40        50        60 
AGAUCGACAUCGGAUGG---|    AAUC   U         C  G  A     A AUGCUAA 
                    CUGUG    GGC UAAUCUCAG UG CA CUGUG G       \
                    GACAC    UCG AUUAGGGUC AC GU GACAC C       C
AAGAGUCUCCAUUCUUUAAC^    AAA-   U         U  G  -     C UCUUAAC 
120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-216-P2b_5p

mirBase accessionMIMAT0007223
Sequence
0- UAAUCUCAGCUGGCAACUGUGAG -23
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Star sequence

Oan-Mir-216-P2b_3p*

mirBase accessionMIMAT0007224
Sequence
40- CACAGUGGCAUCUGGGAUUAUG -62
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