Mir-216-P2b

MirGeneDB ID

Pbv-Mir-216-P2b

Family name

MIR-216 (all species)

Seed

AAUCUCA

Species

Burmese python (Python bivittatus)

MiRBase ID

pbv-mir-216a

Paralogues

Pbv-Mir-216-P2a

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2b Aga-Mir-216-P2 Ami-Mir-216-P2b Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2b Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2b Cja-Mir-216-P2b Cli-Mir-216-P2b Cmi-Mir-216-P2b Cpi-Mir-216-P2b Cpo-Mir-216-P2b Csc-Mir-216-P2 Dan-Mir-216-P2 Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2b Dpu-Mir-216-P2 Dre-Mir-216-P2b Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2b1 Eca-Mir-216-P2b Ete-Mir-216-P2b Gga-Mir-216-P2b Gja-Mir-216-P2b Gmo-Mir-216-P2b Hme-Mir-216-P2 Hsa-Mir-216-P2b Isc-Mir-216-P2 Laf-Mir-216-P2b Lch-Mir-216-P2b Loc-Mir-216-P2b Mal-Mir-216-P2b Mdo-Mir-216-P2b Mml-Mir-216-P2b Mmr-Mir-216-P2b Mmu-Mir-216-P2b Mun-Mir-216-P2b Neu-Mir-216-P2b Oan-Mir-216-P2b Ocu-Mir-216-P2b Pab-Mir-216-P2b Pca-Mir-216-P2 Pma-Mir-216-P2b1 Rno-Mir-216-P2b Sha-Mir-216-P2b Spt-Mir-216-P2b Sto-Mir-216-P2b Tca-Mir-216-P2 Tgu-Mir-216-P2b Tni-Mir-216-P2b Tur-Mir-216-P2 Xla-Mir-216-P2b3 Xla-Mir-216-P2b4 Xtr-Mir-216-P2b

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(GCA_000186305.2_Python_molurus_bivittatus)

KE953947.1: 195087-195148 [+]

Clustered miRNAs
(< 50kb from Mir-216-P2b)

Mir-216-P2a KE953947.1: 188163-188223 [+]
Mir-216-P2b KE953947.1: 195087-195148 [+]
Mir-217-v2 KE953947.1: 202071-202131 [+]
Mir-217-v1 KE953947.1: 202072-202130 [+]

Precursor
(pre-Mir +30nt flank)

AGGUCUUCUACAGAUGGCUGUGAAUUGGUUUAAUCUCAGCUGGCAACUGUGAGCAGUUAAUAAAUUCUCUCACAGUGGUAUCUGGGAUUAUGCUAAACGCAGCAAUUUCCUUGCUUUUAUGG

Get precursor sequence

Structure

        10           20        30        40        50        60 
AGGUCUUCUACAGAUGG---|    AA     U         CUG  A        CAGUUAA 
                    CUGUG  UUGGU UAAUCUCAG   GC ACUGUGAG       \
                    GACGC  AAUCG AUUAGGGUC   UG UGACACUC       U
GGUAUUUUCGUUCCUUUAAC^    A-     U         UA-  G        UCUUAAA 
120       110       100         90        80         70