Mir-217-v1

MirGeneDB ID

Pbv-Mir-217-v1

Family name

MIR-217 (all species)

Seed

ACUGCAU

Species

Burmese python (Python bivittatus)

MiRBase ID

pbv-mir-217

Paralogues

Pbv-Mir-217-v2

Orthologues

Aca-Mir-217-v1 Ami-Mir-217-v1 Bfl-Mir-217 Bla-Mir-217 Bta-Mir-217-v1 Cfa-Mir-217-v1 Cja-Mir-217-v1 Cli-Mir-217-v1 Cmi-Mir-217 Cpi-Mir-217-v1 Cpo-Mir-217-v1 Dno-Mir-217-v1 Dre-Mir-217-v1 Eca-Mir-217-v1 Ete-Mir-217-v1 Gga-Mir-217-v1 Gja-Mir-217-v1 Gmo-Mir-217 Hsa-Mir-217-v1 Laf-Mir-217 Lch-Mir-217 Loc-Mir-217 Mal-Mir-217 Mdo-Mir-217 Mml-Mir-217-v1 Mmr-Mir-217 Mmu-Mir-217-v1 Mun-Mir-217-v1 Neu-Mir-217-v1 Oan-Mir-217-v1 Ocu-Mir-217-v1 Pab-Mir-217-v1 Rno-Mir-217-v1 Sha-Mir-217-v1 Spt-Mir-217 Sto-Mir-217-v1 Tgu-Mir-217-v1 Tni-Mir-217 Xtr-Mir-217-v1

Node of Origin (locus)

Chordata

Node of Origin (family)

Chordata

Genome context
(GCA_000186305.2_Python_molurus_bivittatus)

KE953947.1: 202072-202130 [+]

Clustered miRNAs
(< 50kb from Mir-217-v1)

Mir-216-P2a KE953947.1: 188163-188223 [+]
Mir-216-P2b KE953947.1: 195087-195148 [+]
Mir-217-v2 KE953947.1: 202071-202131 [+]
Mir-217-v1 KE953947.1: 202072-202130 [+]

Precursor
(pre-Mir +30nt flank)

AUGUAGCUGCAGAGUUUUUGAUGUCGCAGAUACUGCAUCAGGAACUGAUUGGAUAAUAAUCAGGCACCAUCAGUUCUUAAUGCAUUGCCUUCAGCAUCUAAACAAGCUUCAAUGAAAUG

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Structure

        10          20        30        40        50         
AUGUAGCUGCAGAGUUUUU--|    CGC  A  C     C          U  AUAAUA 
                     GAUGU   AG UA UGCAU AGGAACUGAU GG      A
                     CUACG   UC GU ACGUA UUCUUGACUA CC      U
GUAAAGUAACUUCGAACAAAU^    ACU  C  U     A          -  ACGGAC 
       110       100        90        80        70         60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Pbv-Mir-217-v1_5p

mirBase accession

MIMAT0039026

Sequence

0- UACUGCAUCAGGAACUGAUUGGA -23

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Star sequence

Pbv-Mir-217-v1_3p* (predicted)

mirBase accession

None

Sequence

37- CAUCAGUUCUUAAUGCAUUGCC -59

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