MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-216-P2b

Family name MIR-216 (all species)
Seed AAUCUCA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-216a
Paralogues Tni-Mir-216-P2a 
Orthologues Aae-Mir-216-P2  Aca-Mir-216-P2b  Ami-Mir-216-P2b  Asu-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Bta-Mir-216-P2b  Cbr-Mir-216-P2  Cel-Mir-216-P2  Cfa-Mir-216-P2b  Cgi-Mir-216-P2  Cli-Mir-216-P2b  Cmi-Mir-216-P2b  Cpi-Mir-216-P2b  Cpo-Mir-216-P2b  Dan-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dno-Mir-216-P2b  Dpu-Mir-216-P2  Dre-Mir-216-P2b  Dsi-Mir-216-P2  Dya-Mir-216-P2  Ebu-Mir-216-P2b1  Efe-Mir-216-P2  Ete-Mir-216-P2b  Gga-Mir-216-P2b  Gja-Mir-216-P2b  Gmo-Mir-216-P2b  Hme-Mir-216-P2  Hsa-Mir-216-P2b  Isc-Mir-216-P2  Lch-Mir-216-P2b  Lgi-Mir-216-P2  Loc-Mir-216-P2b  Mal-Mir-216-P2b  Mdo-Mir-216-P2b  Mml-Mir-216-P2b  Mmu-Mir-216-P2b  Mun-Mir-216-P2b  Oan-Mir-216-P2b  Ocu-Mir-216-P2b  Pbv-Mir-216-P2b  Pma-Mir-216-P2b1  Rno-Mir-216-P2b  Sha-Mir-216-P2b  Spt-Mir-216-P2b  Sto-Mir-216-P2b  Tca-Mir-216-P2  Tgu-Mir-216-P2b  Xla-Mir-216-P2b3  Xla-Mir-216-P2b4  Xtr-Mir-216-P2b 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
17: 5747764-5747826 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-216-P2b)
Mir-216-P2a 17: 5747094-5747154 [+] UCSC Ensembl
Mir-216-P2b 17: 5747764-5747826 [+] UCSC Ensembl
Mir-217 17: 5748319-5748377 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCUCCUUGUGUUCUGUUGUGUUUUGGUGAAAUCUCAGCUGGCAACUGUGAGUCGUUCACUAGCUGCUCUCACAAUGGCCUCUGGGAUUAUGCUAAACACAGCGCCUCGGCUGCUGUCCCCA
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Structure
        10           20        30        40        50        60 
UUUCUCCUUGUGUUCUG---|       U    A        CU   AAC      UCGUUCA 
                    UUGUGUUU GGUG AAUCUCAG  GGC   UGUGAG       C
                    GACACAAA UCGU UUAGGGUC  CCG   ACACUC       U
ACCCCUGUCGUCGGCUCCGC^       -    A        U-   GUA      UCGUCGA 
 120       110       100         90         80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-216-P2b_5p

mirBase accessionMIMAT0002974
Sequence
0- AAAUCUCAGCUGGCAACUGUGAG -23
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Star sequence

Tni-Mir-216-P2b_3p* (predicted)

mirBase accessionNone
Sequence
41- CACAAUGGCCUCUGGGAUUAUG -63
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