MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-217-P4-v1

Family name MIR-217 (all species)
Seed ACUGCAU
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-217
Paralogues Xla-Mir-217-P3-v1  Xla-Mir-217-P3-v2  Xla-Mir-217-P4-v2 
Orthologues Bfl-Mir-217  Bla-Mir-217  Cmi-Mir-217  Gmo-Mir-217  Laf-Mir-217  Lch-Mir-217  Loc-Mir-217  Mal-Mir-217  Mdo-Mir-217  Mmr-Mir-217  Spt-Mir-217  Tni-Mir-217 
Node of Origin (locus) X. laevis
Node of Origin (family) Chordata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030733.1: 27719893-27719951 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-217-P4-v1)		 Mir-217-P4-v2 NC_030733.1: 27719892-27719952 [+] UCSC Ensembl
Mir-217-P4-v1 NC_030733.1: 27719893-27719951 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCCAAAUUCAAUUAUUUUGAUGUUGUAGAUACUGCAUCAGGAACUGAUUGGAUCCCAGGGAGCAGCCAUCAGUUCCUAAUGCAUUGCCUUCGGCAUCUAAACAAACAUCUUUUUAGGG
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Structure
        10          20        30        40        50         
GGCCAAAUUCAAUUAUUUU--|      U  A  C     C          U  AUCCCA 
                     GAUGUUG AG UA UGCAU AGGAACUGAU GG      G
                     CUACGGC UC GU ACGUA UCCUUGACUA CC      G
GGGAUUUUUCUACAAACAAAU^      U  C  U     A          -  GACGAG 
       110       100        90        80        70         60
Deep sequencing
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Em
Mature sequence

Xla-Mir-217-P4-v1_5p
mirBase accessionMIMAT0046538
Sequence 
0- UACUGCAUCAGGAACUGAUUGGA -23
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Star sequence

Xla-Mir-217-P4-v1_3p*
mirBase accessionMIMAT0046539
Sequence 
37- CAUCAGUUCCUAAUGCAUUGCC -59
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