MirGeneDB ID | Pcr-Mir-216-P2o2 |
Family name |
MIR-216 (all species) |
Seed |
AAUCUCA |
Species |
Tiger flatworm (Prostheceraeus crozieri ) |
MiRBase ID |
|
Paralogues |
Pcr-Mir-216-P1
Pcr-Mir-216-P2o1-v1
Pcr-Mir-216-P2o1-v2
|
Orthologues |
Aae-Mir-216-P2
Aga-Mir-216-P2
Asu-Mir-216-P2
Ava-Mir-216-P2
Bfl-Mir-216-P2
Bge-Mir-216-P2
Bko-Mir-216-P2
Bla-Mir-216-P2
Bpl-Mir-216-P2
Cbr-Mir-216-P2
Cel-Mir-216-P2
Csc-Mir-216-P2
Dan-Mir-216-P2
Dlo-Mir-216-P2
Dma-Mir-216-P2
Dme-Mir-216-P2
Dmo-Mir-216-P2
Dpu-Mir-216-P2
Dsi-Mir-216-P2
Dya-Mir-216-P2
Hme-Mir-216-P2
Isc-Mir-216-P2
Pca-Mir-216-P2
Tca-Mir-216-P2
Tur-Mir-216-P2
|
Node of Origin (locus) |
P. crozeri
|
Node of Origin (family) |
Nephrozoa
|
Genome context (GCA_907163375.1_PROCRO_GENOME_genomic) |
CAJQUW010001040.1: 151090-151170 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCACAGAGUGAGCACUUAUCGAUCCCCAGCUAAUCUCAGCCGGUUGAUGUGGAAGAGAAAUAUAGAGCACAAGUUUUCCUAUUGGCGUUCCGCGUGCCGGUUGAGAUUAGCUACGGAUUGUUUUAGACUGCAUGCAACCAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70
GCACAGAGUGAGCACUUAU--| CC UG GAGAAAUAUAGAGCAC
CGAUCC AGCUAAUCUCAGCCGGU AUGUGGAA \
GUUAGG UCGAUUAGAGUUGGCCG UGCGCCUU A
CACCAACGUACGUCAGAUUUU^ CA -- GCGGUUAUCCUUUUGA
. 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Pcr-Mir-216-P2o2_5p |
mirBase accession | None |
Sequence |
0- UAAUCUCAGCCGGUUGAUGUGGAA -24
Get sequence
|
Star sequence |
Pcr-Mir-216-P2o2_3p* |
mirBase accession | None |
Sequence |
59- CCGCGUGCCGGUUGAGAUUAGC -81
Get sequence
|