MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-216-P2g

Family name MIR-216 (all species)
Seed AAUCUCA
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-216-P2h  Lpo-Mir-216-P2i 
Orthologues Aae-Mir-216-P2  Aga-Mir-216-P2  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Cbr-Mir-216-P2  Cel-Mir-216-P2  Csc-Mir-216-P2  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dpu-Mir-216-P2  Dsi-Mir-216-P2  Dya-Mir-216-P2  Hme-Mir-216-P2  Isc-Mir-216-P2  Pca-Mir-216-P2  Tca-Mir-216-P2  Tur-Mir-216-P2 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Nephrozoa
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013668423.1: 43803-43858 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUUCCCCCGGAAUGUAUAAUGGUGACGGUCCAAUCUCAUGAGGUAACUCCGGAUAAGCUUACUUCGGGGUACCUGGUGAGAUGCGAUAGGCACCAAGUUCUCGCCAAUCUAACCUU
Get precursor sequence
Structure
        10          20        30         40        50        
CUUCCCCCGGAAUGUAUAA--     ACG   -| A      G     A       UAAG 
                     UGGUG   GUC CA UCUCAU AGGUA CUCCGGA    \
                     ACCAC   UAG GU AGAGUG UCCAU GGGGCUU    C
UUCCAAUCUAACCGCUCUUGA     GGA   C^ -      G     -       CAUU 
    110       100        90         80        70         60
Deep sequencing
Go to detailed chart
CommentIt appears that the 5p arm is monouridylated at its 3' end.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ge Ge So So So To
Mature sequence

Lpo-Mir-216-P2g_5p
mirBase accessionNone
Sequence 
0- CAAUCUCAUGAGGUAACUCCGGA -23
Get sequence
Star sequence

Lpo-Mir-216-P2g_3p*
mirBase accessionNone
Sequence 
34- CGGGGUACCUGGUGAGAUGCGA -56
Get sequence