| MirGeneDB ID | Dpu-Mir-12604 |
|---|
| Family name |
MIR-12604 (all species) |
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| Seed |
CUGGGUU |
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| Species |
Common water flea (Daphnia pulex) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Dma-Mir-12604
|
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| Node of Origin (locus) |
Daphnia
|
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| Node of Origin (family) |
Daphnia
|
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Genome context
(Daphnia_pulex.V1.0) |
DAPPUscaffold_24: 361300-361359 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGCCUGCAGAAAAUUUGAUUUAGUUUGAGUCCAGUUUUACAUACCCCAUAGAAUGUAUUUAAUAUCUCUGGGUUAUGAUUAAGACUGGGCAAAAGCUAUUUGCUACAACAUGUAAUGAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGCCUGCAGAAAAUUUGAUU-- GA --| C U AUGUA
UAGUUU GUCCAGUUUUA CAUA CCCA AGA U
AUCGAA CGGGUCAGAAU GUAU GGGU UCU U
UAAGUAAUGUACAACAUCGUUU AA UA^ U C AUAAU
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Dpu-Mir-12604_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CCAGUUUUACAUACCCCAUAGA -22
Get sequence
|
|---|
| Mature sequence |
Dpu-Mir-12604_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UCUGGGUUAUGAUUAAGACUGGGC -60
Get sequence
|
|---|
