MirGeneDB ID | Dpu-Iab-4-as |
Family name |
IAB-4 (all species) |
Seed |
GGAUACA |
Species |
Common water flea (Daphnia pulex) |
MiRBase ID |
|
Paralogues |
Dpu-Iab-4
|
Orthologues |
Aga-Iab-4
Aga-Iab-4-as
Bge-Iab-4
Bge-Iab-4-as
Dan-Iab-4
Dan-Iab-4-as
Dlo-Iab-4
Dlo-Iab-4-as
Dma-Iab-4
Dme-Iab-4
Dme-Iab-4-as
Dmo-Iab-4
Dmo-Iab-4-as
Dsi-Iab-4
Dsi-Iab-4-as
Dya-Iab-4
Dya-Iab-4-as
Gpa-Iab-4
Hme-Iab-4
Hme-Iab-4-as
Isc-Iab-4
Tca-Iab-4
Tca-Iab-4-as
|
Node of Origin (locus) |
Pancrustacea
|
Node of Origin (family) |
Arthropoda
|
Genome context (Daphnia_pulex.V1.0) |
DAPPUscaffold_7: 515544-515604 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUUGUAAUUUGUUGAAAGUGUUGCCUCCUGUUACGUAUACUGAAGGUAUACCGGAAUGAAUGAAGCUCAGGAUACAUUCAGUAUACGUCCAGGGGGUUAAACAUCCAGUCGACCGAGUCGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUUGUAAUUUGUUGAAA--| GUU UU G A GGAAUGAA
GU GCCUCCUG ACGUAUACUGAA GUAU CC \
CA UGGGGGAC UGCAUAUGACUU CAUA GG U
UGCUGAGCCAGCUGACCUA^ AAU C- A - ACUCGAAG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Dpu-Iab-4-as_5p* |
mirBase accession | None |
Sequence |
0- UUACGUAUACUGAAGGUAUACCGG -24
Get sequence
|
Mature sequence |
Dpu-Iab-4-as_3p |
mirBase accession | None |
Sequence |
38- AGGAUACAUUCAGUAUACGUCCA -61
Get sequence
|