MirGeneDB ID | Bge-Iab-4-as |
Family name |
IAB-4 (all species) |
Seed |
UACGUAU |
Species |
Cockroach (Blattella germanica) |
MiRBase ID |
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Paralogues |
Bge-Iab-4
|
Orthologues |
Aga-Iab-4
Aga-Iab-4-as
Dan-Iab-4
Dan-Iab-4-as
Dlo-Iab-4
Dlo-Iab-4-as
Dma-Iab-4
Dme-Iab-4
Dme-Iab-4-as
Dmo-Iab-4
Dmo-Iab-4-as
Dpu-Iab-4
Dpu-Iab-4-as
Dsi-Iab-4
Dsi-Iab-4-as
Dya-Iab-4
Dya-Iab-4-as
Gpa-Iab-4
Hme-Iab-4
Hme-Iab-4-as
Isc-Iab-4
Tca-Iab-4
Tca-Iab-4-as
|
Node of Origin (locus) |
Pancrustacea
|
Node of Origin (family) |
Arthropoda
|
Genome context (Bger_2.0) |
KZ615014.1: 687803-687863 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
CGUUCCUGAAGAUCAAAGUGUGGCCUCCUGUUACGUAUACUGAAGGUAUACCGGAAAAGAAUACACUCAGGAUACAUUCAGUAUACGUACAGGGGGUUGUACAUUUUCGCCGAGGGUCGCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CGUUCCUGAAGAUCAAA--| UG U G A G AAAGA
GUG GCCUCCUGU ACGUAUACUGAA GUAU CC GA \
CAU UGGGGGACA UGCAUAUGACUU CAUA GG CU A
CCGCUGGGAGCCGCUUUUA^ GU - A - A CACAU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ad |
Ad |
Co |
Co |
Di |
Di |
Eg |
Eg |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
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Mature sequence |
Bge-Iab-4-as_5p |
mirBase accession | None |
Sequence |
0- UUACGUAUACUGAAGGUAUACCGGA -25
Get sequence
|
Star sequence |
Bge-Iab-4-as_3p* |
mirBase accession | None |
Sequence |
38- AGGAUACAUUCAGUAUACGUACA -61
Get sequence
|