MirGeneDB 3.0
MirGeneDB ID

Tca-Iab-4

Family name IAB-4 (all species)
Seed CGUAUAC
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-iab-4
Paralogues Tca-Iab-4-as 
Orthologues Aae-Iab-4-P1  Aae-Iab-4-P1-as  Aae-Iab-4-P2  Aae-Iab-4-P2-as  Aga-Iab-4  Aga-Iab-4-as  Bge-Iab-4  Bge-Iab-4-as  Csc-Iab-4-P6  Csc-Iab-4-P6-as  Csc-Iab-4-P7  Csc-Iab-4-P7-as  Dan-Iab-4  Dan-Iab-4-as  Dlo-Iab-4  Dlo-Iab-4-as  Dma-Iab-4  Dme-Iab-4  Dme-Iab-4-as  Dmo-Iab-4  Dmo-Iab-4-as  Dpu-Iab-4  Dpu-Iab-4-as  Dsi-Iab-4  Dsi-Iab-4-as  Dya-Iab-4  Dya-Iab-4-as  Gpa-Iab-4  Hme-Iab-4  Hme-Iab-4-as  Isc-Iab-4  Lpo-Iab-4-P3  Lpo-Iab-4-P3-as  Lpo-Iab-4-P4  Lpo-Iab-4-P5  Lpo-Iab-4-P5-as 
Node of Origin (locus) Arthropoda
Node of Origin (family) Arthropoda
Genome context
(Tcas5.2)		 LG2: 7972007-7972063 [-] Ensembl
Clustered miRNAs
(< 50kb from Iab-4)		 Iab-4 LG2: 7972007-7972063 [-] Ensembl
Iab-4-as LG2: 7972007-7972066 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGACUGAAGACAGAAUGUUAAACCCCCUGUACGUAUACUGAAUGUAUCCUGAGUGUUUUCUGUCCGGUAUACCUUCAGUAUACGUAACAGGAGGCCACAUUUCAACGGUCCGGCCUC
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Structure
        10        20          30        40         50       
AGACUGAAGACAGAAUGUUAAA-  C    -             U    -| U  GUGU 
                       CC CCUG UACGUAUACUGAA GUAU CC GA    U
                       GG GGAC AUGCAUAUGACUU CAUA GG CU    U
CUCCGGCCUGGCAACUUUACACC  A    A             C    U^ C  GUCU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Iab-4_5p
mirBase accessionMIMAT0008393
Sequence 
0- ACGUAUACUGAAUGUAUCCUGA -22
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Star sequence

Tca-Iab-4_3p*
mirBase accessionMIMAT0008394
Sequence 
35- GGUAUACCUUCAGUAUACGUAA -57
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