MirGeneDB ID | Lpo-Iab-4-P5 |
Family name |
IAB-4 (all species) |
Seed |
CGUAUAC |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Iab-4-P3
Lpo-Iab-4-P3-as
Lpo-Iab-4-P4
Lpo-Iab-4-P5-as
|
Orthologues |
Aga-Iab-4
Bge-Iab-4
Dan-Iab-4
Dlo-Iab-4
Dma-Iab-4
Dme-Iab-4
Dmo-Iab-4
Dpu-Iab-4
Dsi-Iab-4
Dya-Iab-4
Gpa-Iab-4
Hme-Iab-4
Isc-Iab-4
Tca-Iab-4
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Arthropoda
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013675054.1: 13731-13788 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAUGGAGAGAGGAUUGAAGAAGUCUCUAGUUCGUAUACUGAAUGUAUCCUGAGUGUAAAACUUUCCGGUACACCUUCAGUAUACGUAGCUAGCGACUUGCAUUUACGUCAGGAAGAAC
Get precursor sequence
|
Structure | 10 20 30 40 50
GAUGGAGAGAGGAUUGAAG- U - --| U U GUGUA
AAGUC CUAGUU CGUAUACUGAA UGUA CC GA \
UUCAG GAUCGA GCAUAUGACUU ACAU GG CU A
CAAGAAGGACUGCAUUUACG C U CC^ - C UUCAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Lpo-Iab-4-P5_5p |
mirBase accession | None |
Sequence |
0- UCGUAUACUGAAUGUAUCCUGA -22
Get sequence
|
Star sequence |
Lpo-Iab-4-P5_3p* |
mirBase accession | None |
Sequence |
36- GGUACACCUUCAGUAUACGUAG -58
Get sequence
|