MirGeneDB ID | Lpo-Iab-4-P4 |
Family name |
IAB-4 (all species) |
Seed |
CGUAUAC |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Iab-4-P3
Lpo-Iab-4-P3-as
Lpo-Iab-4-P5
Lpo-Iab-4-P5-as
|
Orthologues |
Bge-Iab-4
Dan-Iab-4
Dma-Iab-4
Dme-Iab-4
Dmo-Iab-4
Dpu-Iab-4
Dsi-Iab-4
Dya-Iab-4
Hme-Iab-4
Isc-Iab-4
Tca-Iab-4
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Arthropoda
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013665793.1: 590939-590998 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGUUUCCGCAGCUAUGUUAGAGACUCCAGCUCGUAUACUGAUAGUAUCCUGAGUUGAAAUUACUUUCCGGUAUACCUUCAGUAUACGUAGCAGGCGACUCUACUUCUCGUCGAUGGUUGU
Get precursor sequence
|
Structure | 10 20 30 40 50
AGUUUCCGCAGCUAUGU- ACU A - UA -| U GUUGAA
UAGAG CC GCU CGUAUACUGA GUAU CC GA \
AUCUC GG CGA GCAUAUGACU CAUA GG CU A
UGUUGGUAGCUGCUCUUC AGC A U UC U^ C UUCAUU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Lpo-Iab-4-P4_5p |
mirBase accession | None |
Sequence |
0- UCGUAUACUGAUAGUAUCCUGA -22
Get sequence
|
Star sequence |
Lpo-Iab-4-P4_3p* (predicted) |
mirBase accession | None |
Sequence |
38- GGUAUACCUUCAGUAUACGUAG -60
Get sequence
|