MirGeneDB ID | Lpo-Iab-4-P5-as |
Family name |
IAB-4 (all species) |
Seed |
ACGUAUA |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Iab-4-P3
Lpo-Iab-4-P3-as
Lpo-Iab-4-P4
Lpo-Iab-4-P5
|
Orthologues |
Aga-Iab-4
Bge-Iab-4
Dan-Iab-4
Dlo-Iab-4
Dma-Iab-4
Dme-Iab-4
Dmo-Iab-4
Dpu-Iab-4
Dsi-Iab-4
Dya-Iab-4
Gpa-Iab-4
Hme-Iab-4
Isc-Iab-4
Tca-Iab-4
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Arthropoda
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013675054.1: 13732-13790 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUCUUCCUGACGUAAAUGCAAGUCGCUAGCUACGUAUACUGAAGGUGUACCGGAAAGUUUUACACUCAGGAUACAUUCAGUAUACGAACUAGAGACUUCUUCAAUCCUCUCUCCAUCUC
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCUUCCUGACGUAAAUGC--| G CUA G A G AAGUU
AAGUC CUAG CGUAUACUGAA GUGU CC GA \
UUCAG GAUC GCAUAUGACUU CAUA GG CU U
CUCUACCUCUCUCCUAACUUC^ A AA- A - A CACAU
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Lpo-Iab-4-P5-as_5p |
mirBase accession | None |
Sequence |
0- UACGUAUACUGAAGGUGUACCGGA -24
Get sequence
|
Co-mature sequence |
Lpo-Iab-4-P5-as_3p |
mirBase accession | None |
Sequence |
37- AGGAUACAUUCAGUAUACGAAC -59
Get sequence
|