MirGeneDB ID | Aae-Iab-4-P1 |
Family name |
IAB-4 (all species) |
Seed |
CGUAUAC |
Species |
Yellow fever mosquito (Aedes aegypti) |
MiRBase ID |
aae-mir-iab-4-1
|
Paralogues |
Aae-Iab-4-P1-as
Aae-Iab-4-P2
Aae-Iab-4-P2-as
|
Orthologues |
Aga-Iab-4
Bge-Iab-4
Dan-Iab-4
Dlo-Iab-4
Dma-Iab-4
Dme-Iab-4
Dmo-Iab-4
Dpu-Iab-4
Dsi-Iab-4
Dya-Iab-4
Gpa-Iab-4
Hme-Iab-4
Isc-Iab-4
Tca-Iab-4
|
Node of Origin (locus) |
A. aegypti
|
Node of Origin (family) |
Arthropoda
|
Genome context (Aaeg_L3) |
supercont1.708: 50265-50321 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUACUUCGUUGCUCACGUACUGCUUCAUGAACGUAUACUGAAUGUAUCCUGAGUGCUAUCUAUCCGGUAUACCUUCAGUAUACGUAACAGGAGGCUGCACAAUCAUCUUUAGUCGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
AUACUUCGUUGCUCACGUACU- A A- U -| U GUGC
GCUUC UG ACGUAUACUGAA GUAU CC GA U
CGGAG AC UGCAUAUGACUU CAUA GG CU A
GGGCUGAUUUCUACUAACACGU G AA C U^ C AUCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Aae-Iab-4-P1_5p |
mirBase accession | MIMAT0014278 |
Sequence |
0- ACGUAUACUGAAUGUAUCCUGA -22
Get sequence
|
Star sequence |
Aae-Iab-4-P1_3p* (predicted) |
mirBase accession | MIMAT0016977 |
Sequence |
35- GGUAUACCUUCAGUAUACGUAA -57
Get sequence
|