MirGeneDB 3.0
MirGeneDB ID

Tca-Iab-4-as

Family name IAB-4 (all species)
Seed GGAUACA
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-iab-8
Paralogues Tca-Iab-4 
Orthologues Aga-Iab-4  Aga-Iab-4-as  Bge-Iab-4  Bge-Iab-4-as  Dan-Iab-4  Dan-Iab-4-as  Dlo-Iab-4  Dlo-Iab-4-as  Dma-Iab-4  Dme-Iab-4  Dme-Iab-4-as  Dmo-Iab-4  Dmo-Iab-4-as  Dpu-Iab-4  Dpu-Iab-4-as  Dsi-Iab-4  Dsi-Iab-4-as  Dya-Iab-4  Dya-Iab-4-as  Gpa-Iab-4  Hme-Iab-4  Hme-Iab-4-as  Isc-Iab-4 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Arthropoda
Genome context
(Tcas5.2)		 LG2: 7972007-7972066 [+] Ensembl
Clustered miRNAs
(< 50kb from Iab-4-as)		 Iab-4 LG2: 7972007-7972063 [-] Ensembl
Iab-4-as LG2: 7972007-7972066 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GAGGCCGGACCGUUGAAAUGUGGCCUCCUGUUACGUAUACUGAAGGUAUACCGGACAGAAAACACUCAGGAUACAUUCAGUAUACGUACAGGGGGUUUAACAUUCUGUCUUCAGUCUUCG
Get precursor sequence
Structure
        10        20          30        40        50        60
GAGGCCGGACCGUUGAAA   --|         U            G    A  G  CAGA 
                  UGU  GGCCUCCUGU ACGUAUACUGAA GUAU CC GA    A
                  ACA  UUGGGGGACA UGCAUAUGACUU CAUA GG CU    A
GCUUCUGACUUCUGUCUU   AU^         -            A    -  A  CACA 
.       110       100        90         80         70
Deep sequencing
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CommentThere is a second Drosha cut +1 relatie to what is annotated here.
3' NTU No
MotifsNo
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Iab-4-as_5p*
mirBase accessionMIMAT0018698
Sequence 
0- UUACGUAUACUGAAGGUAUACCGGA -25
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Mature sequence

Tca-Iab-4-as_3p
mirBase accessionMIMAT0018699
Sequence 
37- AGGAUACAUUCAGUAUACGUACA -60
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