MirGeneDB 3.0

MirGeneDB ID

Dpu-Mir-1

Family name

MIR-1 (all species)

Seed

Species

Common water flea (Daphnia pulex)

MiRBase ID

dpu-mir-1

Paralogues

Orthologues

Aae-Mir-1 Aca-Mir-1-P1 Aca-Mir-1-P2 Aca-Mir-1-P3 Aca-Mir-1-P4 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P1 Ami-Mir-1-P2 Ami-Mir-1-P3 Ami-Mir-1-P4 Asu-Mir-1 Ava-Mir-1-P29 Ava-Mir-1-P30 Bfl-Mir-1 Bge-Mir-1 Bko-Mir-1-P22 Bko-Mir-1-P23a Bko-Mir-1-P23b Bla-Mir-1 Bpl-Mir-1-P22 Bpl-Mir-1-P23 Bta-Mir-1-P1 Bta-Mir-1-P2 Bta-Mir-1-P3 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P1 Cfa-Mir-1-P2 Cfa-Mir-1-P3 Cin-Mir-1 Cja-Mir-1-P1 Cja-Mir-1-P2 Cja-Mir-1-P3 Cli-Mir-1-P1 Cli-Mir-1-P2 Cli-Mir-1-P3 Cli-Mir-1-P4 Cmi-Mir-1-P1 Cmi-Mir-1-P3 Cmi-Mir-1-P4 Cpi-Mir-1-P1 Cpi-Mir-1-P2 Cpi-Mir-1-P3 Cpi-Mir-1-P4 Cpo-Mir-1-P1 Cpo-Mir-1-P2 Cpo-Mir-1-P3 Csc-Mir-1-P18a Csc-Mir-1-P18b Csc-Mir-1-P19 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P1 Dno-Mir-1-P2 Dno-Mir-1-P3 Dre-Mir-1-P1 Dre-Mir-1-P2a Dre-Mir-1-P2b Dre-Mir-1-P3 Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Ebu-Mir-1-P5 Ebu-Mir-1-P6a Ebu-Mir-1-P6b Ebu-Mir-1-P7 Ebu-Mir-1-P8 Eca-Mir-1-P1 Eca-Mir-1-P2 Eca-Mir-1-P3 Efe-Mir-1-P9 Efe-Mir-1-P10 Efe-Mir-1-P11 Efe-Mir-1-P12 Egr-Mir-1 Esc-Mir-1 Ete-Mir-1-P1 Ete-Mir-1-P2 Ete-Mir-1-P3 Gga-Mir-1-P1 Gga-Mir-1-P2 Gga-Mir-1-P3 Gga-Mir-1-P4 Gja-Mir-1-P1 Gja-Mir-1-P2e Gja-Mir-1-P2f Gja-Mir-1-P3 Gja-Mir-1-P4c Gja-Mir-1-P4d Gmo-Mir-1-P1 Gmo-Mir-1-P2a Gmo-Mir-1-P3 Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Hsa-Mir-1-P1 Hsa-Mir-1-P2 Hsa-Mir-1-P3 Isc-Mir-1 Laf-Mir-1-P1 Laf-Mir-1-P2 Laf-Mir-1-P3 Lan-Mir-1 Lch-Mir-1-P1 Lch-Mir-1-P2 Lch-Mir-1-P3 Lch-Mir-1-P4 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Loc-Mir-1-P1 Loc-Mir-1-P2 Loc-Mir-1-P3 Lpo-Mir-1-P13 Lpo-Mir-1-P14 Lpo-Mir-1-P15 Lpo-Mir-1-P16 Lpo-Mir-1-P17 Mal-Mir-1-P1 Mal-Mir-1-P2a Mal-Mir-1-P3 Mdo-Mir-1-P1 Mdo-Mir-1-P2 Mdo-Mir-1-P3 Mgi-Mir-1 Mml-Mir-1-P1 Mml-Mir-1-P2 Mml-Mir-1-P3 Mmr-Mir-1-P1 Mmr-Mir-1-P2 Mmr-Mir-1-P3 Mmu-Mir-1-P1 Mmu-Mir-1-P2 Mmu-Mir-1-P3 Mom-Mir-1 Mun-Mir-1-P1 Mun-Mir-1-P2 Mun-Mir-1-P3 Mun-Mir-1-P4 Neu-Mir-1-P1 Npo-Mir-1-P20 Npo-Mir-1-P21 Oan-Mir-1-P1 Oan-Mir-1-P2 Oan-Mir-1-P3 Oan-Mir-1-P4 Obi-Mir-1 Ocu-Mir-1-P1 Ocu-Mir-1-P2 Ocu-Mir-1-P3 Ofu-Mir-1 Ovu-Mir-1 Pab-Mir-1-P1 Pab-Mir-1-P2 Pab-Mir-1-P3 Pau-Mir-1 Pbv-Mir-1-P1 Pbv-Mir-1-P2 Pbv-Mir-1-P3 Pbv-Mir-1-P4 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pma-Mir-1-o1 Pma-Mir-1-o2 Pma-Mir-1-o3 Pma-Mir-1-o4 Pmi-Mir-1 Pve-Mir-1-P27 Pve-Mir-1-P28 Rno-Mir-1-P1 Rno-Mir-1-P2 Rno-Mir-1-P3 Rph-Mir-1 Sha-Mir-1-P1 Sha-Mir-1-P2 Sha-Mir-1-P3 Sko-Mir-1 Sma-Mir-1 Sme-Mir-1-P24 Sme-Mir-1-P25 Sme-Mir-1-P26 Sne-Mir-1 Snu-Mir-1 Spt-Mir-1-P1 Spt-Mir-1-P2 Spt-Mir-1-P3 Spt-Mir-1-P4 Spu-Mir-1 Sro-Mir-1 Sto-Mir-1-P1 Sto-Mir-1-P3 Sto-Mir-1-P4 Tca-Mir-1 Tgu-Mir-1-P1 Tgu-Mir-1-P2 Tgu-Mir-1-P3 Tgu-Mir-1-P4 Tni-Mir-1-P1 Tni-Mir-1-P2a Tni-Mir-1-P3 Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xla-Mir-1-P1a Xla-Mir-1-P1b Xla-Mir-1-P2c Xla-Mir-1-P2d Xla-Mir-1-P3a Xla-Mir-1-P3b Xla-Mir-1-P4a Xla-Mir-1-P4b Xtr-Mir-1-P1 Xtr-Mir-1-P2 Xtr-Mir-1-P3 Xtr-Mir-1-P4

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Daphnia_pulex.V1.0)

DAPPUscaffold_1: 1720883-1720944 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-1)

Mir-133 DAPPUscaffold_1: 1708497-1708561 [-] Ensembl
Mir-1 DAPPUscaffold_1: 1720883-1720944 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UUUUUCAAAAUUAGCGCCUUGGCGUGGGUUCCGUGCUUCCUUACUUCCCAUAGUCAAAUGACAAAACGUAUGGAAUGUAAAGAAGUAUGGAGCAAAUGCCGGGCCAUCGACUCGACUCCAGC

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Structure

        10          20        30        40        50        60
UUUUUCAAAAUUAGCGC--|       GG            C    UUC     GUCAAAU 
                   CUUGGCGU  GUUCCGUGCUUC UUAC   CCAUA       G
                   GGGCCGUA  CGAGGUAUGAAG AAUG   GGUAU       A
CGACCUCAGCUCAGCUACC^       AA            A    UAA     GCAAAAC 
120       110       100        90        80        70

Deep sequencing

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3' NTU

No

Motifs

CNNC at 3p(+17)

Tissue expression

-

+

To

Star sequence

Dpu-Mir-1_5p*

mirBase accession

None

Sequence

0- CCGUGCUUCCUUACUUCCCAUA -22

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Mature sequence

Dpu-Mir-1_3p

mirBase accession

Sequence

40- UGGAAUGUAAAGAAGUAUGGAG -62

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