MirGeneDB 3.0
MirGeneDB ID

Bko-Mir-1-P22

Family name MIR-1 (all species)
Seed GGAAUGU
Species Monogonont Rotifer 2 (Brachionus koreanus)
MiRBase ID
Paralogues Bko-Mir-1-P23a  Bko-Mir-1-P23b 
Orthologues Aae-Mir-1  Aga-Mir-1  Agr-Mir-1  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Bpl-Mir-1-P22  Cbr-Mir-1  Cel-Mir-1  Cin-Mir-1  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Egr-Mir-1  Esc-Mir-1  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Isc-Mir-1  Lan-Mir-1  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Mgi-Mir-1  Mom-Mir-1  Obi-Mir-1  Ofu-Mir-1  Ovu-Mir-1  Pau-Mir-1  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pmi-Mir-1  Rph-Mir-1  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spu-Mir-1  Sro-Mir-1  Tca-Mir-1  Tur-Mir-1  War-Mir-1  Xbo-Mir-1 
Node of Origin (locus) Brachionus
Node of Origin (family) Bilateria
Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom)		 PJRA01000444.1: 1523881-1523940 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUCGAUUUGAGCUCAAGAAACUUUUAUUCAACCAACUUCUUUGCAAAGCCAUAUUGUUAUUUAAUCUAUGGAAUGUAAAGAAGUUUGUGGAGUAAAGUAGUGUGACAGCGAGAAGACAUU
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Structure
        10           20        30        40        50          
UUCGAUUUGAGCUCAAGAA---|    U    A  C            AAG     UUGUUA 
                      ACUUU AUUC AC AACUUCUUUGCA   CCAUA      \
                      UGAAA UGAG UG UUGAAGAAAUGU   GGUAU      U
UUACAGAAGAGCGACAGUGUGA^    -    G  U            AA-     CUAAUU 
.       110       100         90        80         70
Deep sequencing
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Commentpredicted by MirMachine
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bk Bk Bk
Star sequence

Bko-Mir-1-P22_5p*
mirBase accessionNone
Sequence 
0- ACCAACUUCUUUGCAAAGCCAUA -23
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Mature sequence

Bko-Mir-1-P22_3p
mirBase accessionNone
Sequence 
38- UGGAAUGUAAAGAAGUUUGUGG -60
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