MirGeneDB 3.0
MirGeneDB ID

Bko-Mir-1-P23a

Family name MIR-1 (all species)
Seed GGAAUGU
Species Monogonont Rotifer 2 (Brachionus koreanus)
MiRBase ID
Paralogues Bko-Mir-1-P22  Bko-Mir-1-P23b 
Orthologues Aae-Mir-1  Aga-Mir-1  Agr-Mir-1  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Bpl-Mir-1-P23  Cbr-Mir-1  Cel-Mir-1  Cin-Mir-1  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Egr-Mir-1  Esc-Mir-1  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Isc-Mir-1  Lan-Mir-1  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Mgi-Mir-1  Mom-Mir-1  Obi-Mir-1  Ofu-Mir-1  Ovu-Mir-1  Pau-Mir-1  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pmi-Mir-1  Rph-Mir-1  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spu-Mir-1  Sro-Mir-1  Tca-Mir-1  Tur-Mir-1  War-Mir-1  Xbo-Mir-1 
Node of Origin (locus) B. koreanus
Node of Origin (family) Bilateria
Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom)		 PJRA01000509.1: 691716-691778 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACCAUUCCAUUCGUGUAAUUGACUAAUUAGACGCACUUAUCUACAAAUCCAUAUUGAUUUAAAUUUAAUUAUGGAAUGUAGUGAAGUGCGUUGAAUUGUUACACGUAUCAUCGAUGGACUCAU
Get precursor sequence
Structure
        10           20        30        40        50        60 
ACCAUUCCAUUCGUGUAAU---|   U    A         AU     AA      UUGAUUU 
                      UGAC AAUU GACGCACUU  CUACA  UCCAUA       A
                      AUUG UUAA UUGCGUGAA  GAUGU  AGGUAU       A
UACUCAGGUAGCUACUAUGCAC^   -    G         GU     A-      UAAUUUA 
 120       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bk Bk Bk
Star sequence

Bko-Mir-1-P23a_5p*
mirBase accessionNone
Sequence 
0- ACGCACUUAUCUACAAAUCCAUA -23
Get sequence
Mature sequence

Bko-Mir-1-P23a_3p
mirBase accessionNone
Sequence 
41- UGGAAUGUAGUGAAGUGCGUUG -63
Get sequence