MirGeneDB 2.1
MirGeneDB ID

Lpo-Mir-1-P16

Family name MIR-1 (all species)
Seed GGAAUGU
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-1-P13  Lpo-Mir-1-P14  Lpo-Mir-1-P15  Lpo-Mir-1-P17 
Orthologues Aae-Mir-1  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Cbr-Mir-1  Cel-Mir-1  Cgi-Mir-1  Cin-Mir-1  Cte-Mir-1  Dan-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Esc-Mir-1  Hme-Mir-1  Isc-Mir-1  Lan-Mir-1  Lgi-Mir-1  Obi-Mir-1  Ovu-Mir-1  Pfl-Mir-1  Pmi-Mir-1  Sko-Mir-1  Spu-Mir-1  Tca-Mir-1  Xbo-Mir-1 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013670974.1: 27794-27854 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUCACGUGCAGUUUGAUCUCCUUCCGAGCCCCGUGCUUCUUCACUUCCCAUAUGUGGCAUUGUGCUGUAUGGAAUGUAAAGAAGUAUGGAGUGUAGUGGGAGUUUUUCAACACCAAGAGUC
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Structure
        10          20        30        40        50          
AUCACGUGCAGUUUGAU--|    UCCGA  C           C  UUC     UGUGGCA 
                   CUCCU     GC CCGUGCUUCUU AC   CCAUA       \
                   GAGGG     UG GGUAUGAAGAA UG   GGUAU       U
CUGAGAACCACAACUUUUU^    UGAUG  A           A  UAA     GUCGUGU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Fe Fe Fe Ma Ma To
Star sequence

Lpo-Mir-1-P16_5p*
mirBase accessionNone
Sequence 
0- CCGUGCUUCUUCACUUCCCAUA -22
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Mature sequence

Lpo-Mir-1-P16_3p
mirBase accessionNone
Sequence 
39- UGGAAUGUAAAGAAGUAUGGAG -61
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