MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-1-P14

Family name MIR-1 (all species)
Seed GGAAUGU
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-1-P13  Lpo-Mir-1-P15  Lpo-Mir-1-P16  Lpo-Mir-1-P17 
Orthologues Aae-Mir-1  Aga-Mir-1  Agr-Mir-1  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Cbr-Mir-1  Cel-Mir-1  Cin-Mir-1  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Egr-Mir-1  Esc-Mir-1  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Isc-Mir-1  Lan-Mir-1  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Mgi-Mir-1  Mom-Mir-1  Obi-Mir-1  Ofu-Mir-1  Ovu-Mir-1  Pau-Mir-1  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pmi-Mir-1  Rph-Mir-1  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spu-Mir-1  Sro-Mir-1  Tca-Mir-1  Tur-Mir-1  War-Mir-1  Xbo-Mir-1 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013666779.1: 103930-103990 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACUUUGUUCAGUGUUACCUCCUUUUGAGUUCCGUGCUUCCUUACUUCCCAUAUGUGGCAUUAUGCUGUAUGGAAUGUAAAGAAGUAUGGCGCCCUGGAGGAGCCCUCCAACGUCAGUGAAG
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Structure
        10          20        30        40        50          
ACUUUGUUCAGUGUUAC--|      UGA  U         C    UUC     UGUGGCA 
                   CUCCUUU   GU CCGUGCUUC UUAC   CCAUA       \
                   GAGGAGG   CG GGUAUGAAG AAUG   GGUAU       U
GAAGUGACUGCAACCUCCC^      UCC  C         A    UAA     GUCGUAU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ge Ge So So So To
Star sequence

Lpo-Mir-1-P14_5p*
mirBase accessionNone
Sequence 
0- CCGUGCUUCCUUACUUCCCAUA -22
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Mature sequence

Lpo-Mir-1-P14_3p
mirBase accessionNone
Sequence 
39- UGGAAUGUAAAGAAGUAUGGCG -61
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