Mir-1-P2

MirGeneDB ID

Gga-Mir-1-P2

Family name

MIR-1 (all species)

Seed

GGAAUGU

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-206

Paralogues

Gga-Mir-1-P1 Gga-Mir-1-P3 Gga-Mir-1-P4

Orthologues

Aae-Mir-1 Aca-Mir-1-P2 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P2 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P2 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P2 Cin-Mir-1 Cja-Mir-1-P2 Cli-Mir-1-P2 Cpi-Mir-1-P2 Cpo-Mir-1-P2 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P2 Dpu-Mir-1 Dre-Mir-1-P2a Dre-Mir-1-P2b Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Eca-Mir-1-P2 Egr-Mir-1 Esc-Mir-1 Ete-Mir-1-P2 Gja-Mir-1-P2e Gja-Mir-1-P2f Gmo-Mir-1-P2a Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Hsa-Mir-1-P2 Isc-Mir-1 Laf-Mir-1-P2 Lan-Mir-1 Lch-Mir-1-P2 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Loc-Mir-1-P2 Mal-Mir-1-P2a Mdo-Mir-1-P2 Mgi-Mir-1 Mml-Mir-1-P2 Mmr-Mir-1-P2 Mmu-Mir-1-P2 Mom-Mir-1 Mun-Mir-1-P2 Oan-Mir-1-P2 Obi-Mir-1 Ocu-Mir-1-P2 Ofu-Mir-1 Ovu-Mir-1 Pab-Mir-1-P2 Pau-Mir-1 Pbv-Mir-1-P2 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pma-Mir-1-o2 Pmi-Mir-1 Rno-Mir-1-P2 Rph-Mir-1 Sha-Mir-1-P2 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spt-Mir-1-P2 Spu-Mir-1 Sro-Mir-1 Tca-Mir-1 Tgu-Mir-1-P2 Tni-Mir-1-P2a Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xla-Mir-1-P2c Xla-Mir-1-P2d Xtr-Mir-1-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

3: 107587608-107587667 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P2)

Mir-133-P2-v1 3: 107582816-107582874 [-] UCSC Ensembl
Mir-133-P2-v2 3: 107582816-107582874 [-] UCSC Ensembl
Mir-1-P2 3: 107587608-107587667 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGUCACGAUCCAGACUUCUCUUAUGAGAUGACAUGCUUCUUUAUAUCCCCAUAUGGAUUAGGCUGCUAUGGAAUGUAAGGAAGUGUGUGGUUUCAGGGAGACAUCACCAGUGUCCUCUGC

Get precursor sequence

Structure

        10           20        30        40        50          
GGUCACGAUCCAGACUU---|    A      G                CC     UGGAUU 
                    CUCUU UGAGAU ACAUGCUUCUUUAUAU  CCAUA      \
                    GAGGG ACUUUG UGUGUGAAGGAAUGUA  GGUAU      A
CGUCUCCUGUGACCACUACA^    -      G                A-     CGUCGG 
.       110       100         90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-1-P2_5p*

mirBase accession

None

Sequence

0- ACAUGCUUCUUUAUAUCCCCAUA -23

Get sequence

Mature sequence

Gga-Mir-1-P2_3p

mirBase accession

MIMAT0001139

Sequence

38- UGGAAUGUAAGGAAGUGUGUGG -60

Get sequence

Proposed targets

TargetScanVert: gga-miR-206
miRDB: MIMAT0001139