Mir-1-P2

MirGeneDB ID

Bta-Mir-1-P2

Family name

MIR-1 (all species)

Seed

GGAAUGU

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-206

Paralogues

Bta-Mir-1-P1 Bta-Mir-1-P3

Orthologues

Aae-Mir-1 Aca-Mir-1-P2 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P2 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P2 Cin-Mir-1 Cja-Mir-1-P2 Cli-Mir-1-P2 Cpi-Mir-1-P2 Cpo-Mir-1-P2 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P2 Dpu-Mir-1 Dre-Mir-1-P2a Dre-Mir-1-P2b Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Eca-Mir-1-P2 Egr-Mir-1 Esc-Mir-1 Ete-Mir-1-P2 Gga-Mir-1-P2 Gja-Mir-1-P2e Gja-Mir-1-P2f Gmo-Mir-1-P2a Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Hsa-Mir-1-P2 Isc-Mir-1 Laf-Mir-1-P2 Lan-Mir-1 Lch-Mir-1-P2 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Loc-Mir-1-P2 Mal-Mir-1-P2a Mdo-Mir-1-P2 Mgi-Mir-1 Mml-Mir-1-P2 Mmr-Mir-1-P2 Mmu-Mir-1-P2 Mom-Mir-1 Mun-Mir-1-P2 Oan-Mir-1-P2 Obi-Mir-1 Ocu-Mir-1-P2 Ofu-Mir-1 Ovu-Mir-1 Pab-Mir-1-P2 Pau-Mir-1 Pbv-Mir-1-P2 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pma-Mir-1-o2 Pmi-Mir-1 Rno-Mir-1-P2 Rph-Mir-1 Sha-Mir-1-P2 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spt-Mir-1-P2 Spu-Mir-1 Sro-Mir-1 Tca-Mir-1 Tgu-Mir-1-P2 Tni-Mir-1-P2a Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xla-Mir-1-P2c Xla-Mir-1-P2d Xtr-Mir-1-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037350.1: 24567218-24567277 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P2)

Mir-1-P2 NC_037350.1: 24567218-24567277 [+] UCSC Ensembl
Mir-133-P2-v1 NC_037350.1: 24571314-24571372 [+] UCSC Ensembl
Mir-133-P2-v2 NC_037350.1: 24571314-24571372 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGCAGGGGCCAAGACUGCUUCCCAAGGCCACAUGCUUCUUUAUAUCCCCAUACGGAUUACUUUGCUAUGGAAUGUAAGGAAGUGUGUGGUUUCGGCGAGCGCCUCUCCUCGGCCCCACG

Get precursor sequence

Structure

        10          20        30        40        50          
AGGCAGGGGCCAAGACU--|   C  A                     CC     CGGAUU 
                   GCUU CC AGGCCACAUGCUUCUUUAUAU  CCAUA      \
                   CGAG GG UUUGGUGUGUGAAGGAAUGUA  GGUAU      A
GCACCCCGGCUCCUCUCCG^   C  C                     A-     CGUUUC 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-1-P2_5p*

mirBase accession

None

Sequence

0- ACAUGCUUCUUUAUAUCCCCAUA -23

Get sequence

Mature sequence

Bta-Mir-1-P2_3p

mirBase accession

MIMAT0009260

Sequence

38- UGGAAUGUAAGGAAGUGUGUGG -60

Get sequence

Proposed targets

TargetScanVert: bta-miR-206