Mir-1-P2

MirGeneDB ID

Rno-Mir-1-P2

Family name

MIR-1 (all species)

Seed

GGAAUGU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-206

Paralogues

Rno-Mir-1-P1 Rno-Mir-1-P3

Orthologues

Aae-Mir-1 Aca-Mir-1-P2 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P2 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P2 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P2 Cin-Mir-1 Cja-Mir-1-P2 Cli-Mir-1-P2 Cpi-Mir-1-P2 Cpo-Mir-1-P2 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P2 Dpu-Mir-1 Dre-Mir-1-P2a Dre-Mir-1-P2b Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Eca-Mir-1-P2 Egr-Mir-1 Esc-Mir-1 Ete-Mir-1-P2 Gga-Mir-1-P2 Gja-Mir-1-P2e Gja-Mir-1-P2f Gmo-Mir-1-P2a Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Hsa-Mir-1-P2 Isc-Mir-1 Laf-Mir-1-P2 Lan-Mir-1 Lch-Mir-1-P2 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Loc-Mir-1-P2 Mal-Mir-1-P2a Mdo-Mir-1-P2 Mgi-Mir-1 Mml-Mir-1-P2 Mmr-Mir-1-P2 Mmu-Mir-1-P2 Mom-Mir-1 Mun-Mir-1-P2 Oan-Mir-1-P2 Obi-Mir-1 Ocu-Mir-1-P2 Ofu-Mir-1 Ovu-Mir-1 Pab-Mir-1-P2 Pau-Mir-1 Pbv-Mir-1-P2 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pma-Mir-1-o2 Pmi-Mir-1 Rph-Mir-1 Sha-Mir-1-P2 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spt-Mir-1-P2 Spu-Mir-1 Sro-Mir-1 Tca-Mir-1 Tgu-Mir-1-P2 Tni-Mir-1-P2a Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xla-Mir-1-P2c Xla-Mir-1-P2d Xtr-Mir-1-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr9: 26791776-26791835 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P2)

Mir-1-P2 chr9: 26791776-26791835 [+] UCSC Ensembl
Mir-133-P2-v1 chr9: 26795659-26795717 [+] UCSC Ensembl
Mir-133-P2-v2 chr9: 26795659-26795717 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGACCUCGGAGGACACCUCUUCCCCAGGCCACAUGCUUCUUUAUAUCCUCAUAGAUAUCACUGCGCUAUGGAAUGUAAGGAAGUGUGUGGUUUUGGCAAGUGCUUCUUCACGGCCGACGA

Get precursor sequence

Structure

        10          20        30        40        50          
GGACCUCGGAGGACACCU--|  C  C                     C U    GAUAUC 
                    CUU CC AGGCCACAUGCUUCUUUAUAU C CAUA      \
                    GAA GG UUUGGUGUGUGAAGGAAUGUA G GUAU      A
AGCAGCCGGCACUUCUUCGU^  C  U                     A -    CGCGUC 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-1-P2_5p*

mirBase accession

MIMAT0017154

Sequence

0- ACAUGCUUCUUUAUAUCCUCAUA -23

Get sequence

Proposed targets

TargetScanVert: rno-miR-206-5p
miRDB: MIMAT0017154

Mature sequence

Rno-Mir-1-P2_3p

mirBase accession

MIMAT0000879

Sequence

38- UGGAAUGUAAGGAAGUGUGUGG -60

Get sequence

Proposed targets

microrna.org: MIMAT0000879
TargetScanVert: rno-miR-206-3p
miRDB: MIMAT0000879