Mir-1-P3

MirGeneDB ID

Rno-Mir-1-P3

Family name

MIR-1 (all species)

Seed

GGAAUGU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-1b

Paralogues

Rno-Mir-1-P1 Rno-Mir-1-P2

Orthologues

Aae-Mir-1 Aca-Mir-1-P3 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P3 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P3 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P3 Cin-Mir-1 Cja-Mir-1-P3 Cli-Mir-1-P3 Cmi-Mir-1-P3 Cpi-Mir-1-P3 Cpo-Mir-1-P3 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P3 Dpu-Mir-1 Dre-Mir-1-P3 Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Eca-Mir-1-P3 Egr-Mir-1 Esc-Mir-1 Ete-Mir-1-P3 Gga-Mir-1-P3 Gja-Mir-1-P3 Gmo-Mir-1-P3 Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Hsa-Mir-1-P3 Isc-Mir-1 Laf-Mir-1-P3 Lan-Mir-1 Lch-Mir-1-P3 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Loc-Mir-1-P3 Mal-Mir-1-P3 Mdo-Mir-1-P3 Mgi-Mir-1 Mml-Mir-1-P3 Mmr-Mir-1-P3 Mmu-Mir-1-P3 Mom-Mir-1 Mun-Mir-1-P3 Oan-Mir-1-P3 Obi-Mir-1 Ocu-Mir-1-P3 Ofu-Mir-1 Ovu-Mir-1 Pab-Mir-1-P3 Pau-Mir-1 Pbv-Mir-1-P3 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pma-Mir-1-o3 Pmi-Mir-1 Rph-Mir-1 Sha-Mir-1-P3 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spt-Mir-1-P3 Spu-Mir-1 Sro-Mir-1 Sto-Mir-1-P3 Tca-Mir-1 Tgu-Mir-1-P3 Tni-Mir-1-P3 Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xla-Mir-1-P3a Xla-Mir-1-P3b Xtr-Mir-1-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr3: 175769728-175769788 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUGUGCACCCUGAACUACCUGCUUGGGACACAUACUUCUUUAUAUGCCCAUAUGGACCUGCUAAGCUAUGGAAUGUAAAGAAGUAUGUAUUUCAGGCUAGGAACUCUCUCGCCAGACUGA

Get precursor sequence

Structure

        10         20         30        40        50        60
CCUGUGCACCCUGAACUA-   -|    GG C                GC     UGGACC 
                   CCU GCUUG  A ACAUACUUCUUUAUAU  CCAUA      U
                   GGA CGGAC  U UGUAUGAAGAAAUGUA  GGUAU      G
AGUCAGACCGCUCUCUCAA   U^    UU A                A-     CGAAUC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-1-P3_5p*

mirBase accession

None

Sequence

0- ACAUACUUCUUUAUAUGCCCAUA -23

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Mature sequence

Rno-Mir-1-P3_3p

mirBase accession

MIMAT0037263

Sequence

39- UGGAAUGUAAAGAAGUAUGUAU -61

Get sequence

Proposed targets

TargetScanVert: rno-miR-1b
miRDB: MIMAT0037263