MirGeneDB ID | Spt-Mir-1-P3 |
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Family name | MIR-1 (all species) |
Seed | GGAAUGU |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | Spt-Mir-1-P1 Spt-Mir-1-P2 Spt-Mir-1-P4 |
Orthologues | Aae-Mir-1 Aca-Mir-1-P3 Ami-Mir-1-P3 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P3 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P3 Cgi-Mir-1 Cin-Mir-1 Cli-Mir-1-P3 Cmi-Mir-1-P3 Cpi-Mir-1-P3 Cpo-Mir-1-P3 Cte-Mir-1 Dan-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P3 Dpu-Mir-1 Dre-Mir-1-P3 Dsi-Mir-1 Dya-Mir-1 Esc-Mir-1 Ete-Mir-1-P3 Gga-Mir-1-P3 Gja-Mir-1-P3 Gmo-Mir-1-P3 Hme-Mir-1 Hsa-Mir-1-P3 Isc-Mir-1 Lan-Mir-1 Lch-Mir-1-P3 Lgi-Mir-1 Loc-Mir-1-P3 Mal-Mir-1-P3 Mdo-Mir-1-P3 Mml-Mir-1-P3 Mmu-Mir-1-P3 Mun-Mir-1-P3 Oan-Mir-1-P3 Obi-Mir-1 Ocu-Mir-1-P3 Ovu-Mir-1 Pbv-Mir-1-P3 Pfl-Mir-1 Pma-Mir-1-o3 Pmi-Mir-1 Rno-Mir-1-P3 Sha-Mir-1-P3 Sko-Mir-1 Spu-Mir-1 Sto-Mir-1-P3 Tca-Mir-1 Tgu-Mir-1-P3 Tni-Mir-1-P3 Xbo-Mir-1 Xla-Mir-1-P3a Xla-Mir-1-P3b Xtr-Mir-1-P3 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Bilateria |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01009477.1: 3895976-3896036 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | AUGCACCUAUUGAAACUACCUGCUUGAGAGACAUACUUCUUUAUAUGCCCAUAUGAACCUGGCAAGCUAUGGAAUGUAAAGAAGUAUGUAUUUCAGGUAGGGAUCAUUCUCGGUGGAGUUGGet precursor sequence |
Structure | 10 20 30 40 50 60 AUGCACCUAUUGAAACUA--| G GC UGAACC CCUGCUUGAGA ACAUACUUCUUUAUAU CCAUA U GGAUGGACUUU UGUAUGAAGAAAUGUA GGUAU G GUUGAGGUGGCUCUUACUAG^ A A- CGAACG . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Star sequence | Spt-Mir-1-P3_5p* (predicted) |
mirBase accession | None |
Sequence |
0- ACAUACUUCUUUAUAUGCCCAUA -23
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|
Mature sequence | Spt-Mir-1-P3_3p (predicted) |
mirBase accession | None |
Sequence |
39- UGGAAUGUAAAGAAGUAUGUAU -61
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|