Mir-1-P3

MirGeneDB ID

Cpi-Mir-1-P3

Family name

MIR-1 (all species)

Seed

GGAAUGU

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

cpi-mir-1a-1

Paralogues

Cpi-Mir-1-P1 Cpi-Mir-1-P2 Cpi-Mir-1-P4

Orthologues

Aae-Mir-1 Aca-Mir-1-P3 Ami-Mir-1-P3 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P3 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P3 Cgi-Mir-1 Cin-Mir-1 Cli-Mir-1-P3 Cmi-Mir-1-P3 Cpo-Mir-1-P3 Cte-Mir-1 Dan-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P3 Dpu-Mir-1 Dre-Mir-1-P3 Dsi-Mir-1 Dya-Mir-1 Esc-Mir-1 Ete-Mir-1-P3 Gga-Mir-1-P3 Gja-Mir-1-P3 Gmo-Mir-1-P3 Hme-Mir-1 Hsa-Mir-1-P3 Isc-Mir-1 Lan-Mir-1 Lch-Mir-1-P3 Lgi-Mir-1 Loc-Mir-1-P3 Mal-Mir-1-P3 Mdo-Mir-1-P3 Mml-Mir-1-P3 Mmu-Mir-1-P3 Mun-Mir-1-P3 Oan-Mir-1-P3 Obi-Mir-1 Ocu-Mir-1-P3 Ovu-Mir-1 Pbv-Mir-1-P3 Pfl-Mir-1 Pma-Mir-1-o3 Pmi-Mir-1 Rno-Mir-1-P3 Sha-Mir-1-P3 Sko-Mir-1 Spt-Mir-1-P3 Spu-Mir-1 Sto-Mir-1-P3 Tca-Mir-1 Tgu-Mir-1-P3 Tni-Mir-1-P3 Xbo-Mir-1 Xla-Mir-1-P3a Xla-Mir-1-P3b Xtr-Mir-1-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(chrPic1)

JH584739: 1322413-1322473 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P3)

Mir-133-P3-v1 JH584739: 1303616-1303675 [-] UCSC Ensembl
Mir-133-P3-v2 JH584739: 1303616-1303675 [-] UCSC Ensembl
Mir-1-P3 JH584739: 1322413-1322473 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUGCACAUAUUGAAACUACCUGCUUGAGAGACAUACUUCUUUAUAUGCCCAUAUGAACCUGGCAAGCUAUGGAAUGUAAAGAAGUAUGUAUUUCAGGUGGGGAUCAUUCUCAGUGGAGCAA

Get precursor sequence

Structure

        10          20        30        40        50        60
AUGCACAUAUUGAAACUA--| UG       G                GC     UGAACC 
                    CC  CUUGAGA ACAUACUUCUUUAUAU  CCAUA      U
                    GG  GGACUUU UGUAUGAAGAAAUGUA  GGUAU      G
AACGAGGUGACUCUUACUAG^ GU       A                A-     CGAACG 
 .       110       100        90        80         70