MirGeneDB 3.0

MirGeneDB ID

Gga-Mir-1-P3

Family name MIR-1 (all species)
Seed GGAAUGU
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-1a-1
Paralogues Gga-Mir-1-P1  Gga-Mir-1-P2  Gga-Mir-1-P4 
Orthologues Aae-Mir-1  Aca-Mir-1-P3  Aga-Mir-1  Agr-Mir-1  Ami-Mir-1-P3  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Bta-Mir-1-P3  Cbr-Mir-1  Cel-Mir-1  Cfa-Mir-1-P3  Cin-Mir-1  Cja-Mir-1-P3  Cli-Mir-1-P3  Cmi-Mir-1-P3  Cpi-Mir-1-P3  Cpo-Mir-1-P3  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dno-Mir-1-P3  Dpu-Mir-1  Dre-Mir-1-P3  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Eca-Mir-1-P3  Egr-Mir-1  Esc-Mir-1  Ete-Mir-1-P3  Gja-Mir-1-P3  Gmo-Mir-1-P3  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Hsa-Mir-1-P3  Isc-Mir-1  Laf-Mir-1-P3  Lan-Mir-1  Lch-Mir-1-P3  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Loc-Mir-1-P3  Mal-Mir-1-P3  Mdo-Mir-1-P3  Mgi-Mir-1  Mml-Mir-1-P3  Mmr-Mir-1-P3  Mmu-Mir-1-P3  Mom-Mir-1  Mun-Mir-1-P3  Oan-Mir-1-P3  Obi-Mir-1  Ocu-Mir-1-P3  Ofu-Mir-1  Ovu-Mir-1  Pab-Mir-1-P3  Pau-Mir-1  Pbv-Mir-1-P3  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pma-Mir-1-o3  Pmi-Mir-1  Rno-Mir-1-P3  Rph-Mir-1  Sha-Mir-1-P3  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spt-Mir-1-P3  Spu-Mir-1  Sro-Mir-1  Sto-Mir-1-P3  Tca-Mir-1  Tgu-Mir-1-P3  Tni-Mir-1-P3  Tur-Mir-1  War-Mir-1  Xbo-Mir-1  Xla-Mir-1-P3a  Xla-Mir-1-P3b  Xtr-Mir-1-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Gallus_gallus.GRCg6a)
20: 8124314-8124374 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1-P3)
Mir-1-P3 20: 8124314-8124374 [+] UCSC Ensembl
Mir-133-P3-v1 20: 8135551-8135610 [+] UCSC Ensembl
Mir-133-P3-v2 20: 8135551-8135610 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGCGCAUAUUGAACCUACCUGCUUGAGAGACAUACUUCUUUAUAUGCCCAUAUGAACCUGGCAAUCUAUGGAAUGUAAAGAAGUAUGUAUUUCAGGUGGGAACUCUUCUCGGAGGAGCAA
Get precursor sequence
Structure
        10          20        30        40        50        60
AUGCGCAUAUUGAACCUA--| UG       G                GC     UGAACC 
                    CC  CUUGAGA ACAUACUUCUUUAUAU  CCAUA      U
                    GG  GGACUUU UGUAUGAAGAAAUGUA  GGUAU      G
AACGAGGAGGCUCUUCUCAA^ GU       A                A-     CUAACG 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-1-P3_5p*

mirBase accessionMIMAT0031071
Sequence
0- ACAUACUUCUUUAUAUGCCCAUA -23
Get sequence
Proposed targets TargetScanVert: gga-miR-1a-1-5p
miRDB: MIMAT0031071
Mature sequence

Gga-Mir-1-P3_3p

mirBase accessionMIMAT0001127
Sequence
39- UGGAAUGUAAAGAAGUAUGUAU -61
Get sequence
Proposed targets TargetScanVert: gga-miR-1a-3p
miRDB: MIMAT0001127