Mir-1-P3

MirGeneDB ID

Eca-Mir-1-P3

Family name

MIR-1 (all species)

Seed

GGAAUGU

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-1-2

Paralogues

Eca-Mir-1-P1 Eca-Mir-1-P2

Orthologues

Aae-Mir-1 Aca-Mir-1-P3 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P3 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P3 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P3 Cin-Mir-1 Cja-Mir-1-P3 Cli-Mir-1-P3 Cmi-Mir-1-P3 Cpi-Mir-1-P3 Cpo-Mir-1-P3 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P3 Dpu-Mir-1 Dre-Mir-1-P3 Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Egr-Mir-1 Esc-Mir-1 Ete-Mir-1-P3 Gga-Mir-1-P3 Gja-Mir-1-P3 Gmo-Mir-1-P3 Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Hsa-Mir-1-P3 Isc-Mir-1 Laf-Mir-1-P3 Lan-Mir-1 Lch-Mir-1-P3 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Loc-Mir-1-P3 Mal-Mir-1-P3 Mdo-Mir-1-P3 Mgi-Mir-1 Mml-Mir-1-P3 Mmr-Mir-1-P3 Mmu-Mir-1-P3 Mom-Mir-1 Mun-Mir-1-P3 Oan-Mir-1-P3 Obi-Mir-1 Ocu-Mir-1-P3 Ofu-Mir-1 Ovu-Mir-1 Pab-Mir-1-P3 Pau-Mir-1 Pbv-Mir-1-P3 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pma-Mir-1-o3 Pmi-Mir-1 Rno-Mir-1-P3 Rph-Mir-1 Sha-Mir-1-P3 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spt-Mir-1-P3 Spu-Mir-1 Sro-Mir-1 Sto-Mir-1-P3 Tca-Mir-1 Tgu-Mir-1-P3 Tni-Mir-1-P3 Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xla-Mir-1-P3a Xla-Mir-1-P3b Xtr-Mir-1-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009169.1: 49406945-49407005 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P3)

Mir-1-P3 CM009169.1: 49406945-49407005 [+] UCSC Ensembl
Mir-133-P3-v1 CM009169.1: 49417701-49417760 [+] UCSC Ensembl
Mir-133-P3-v2 CM009169.1: 49417701-49417760 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAGCUGCGUACAGAACUACCUGCUUGGGAAACAUACUUCUUUAUAUGCCCAUAUGGACCUGCUAAGCUAUGGAAUGUAAAGAAGUAUGUAUUUCAGGUCGGGAACUCUCUCGCUGGAGUAA

Get precursor sequence

Structure

        10         20         30        40        50        60
GAGCUGCGUACAGAACUA-    -|   GG A                GC     UGGACC 
                   CCUG CUUG  A ACAUACUUCUUUAUAU  CCAUA      U
                   GGGC GGAC  U UGUAUGAAGAAAUGUA  GGUAU      G
AAUGAGGUCGCUCUCUCAA    U^   UU A                A-     CGAAUC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-1-P3_5p*

mirBase accession

None

Sequence

0- ACAUACUUCUUUAUAUGCCCAUA -23

Get sequence

Mature sequence

Eca-Mir-1-P3_3p

mirBase accession

MIMAT0012994

Sequence

39- UGGAAUGUAAAGAAGUAUGUAU -61

Get sequence