Mir-1-P2

MirGeneDB ID

Eca-Mir-1-P2

Family name

MIR-1 (all species)

Seed

GGAAUGU

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-206-2

Paralogues

Eca-Mir-1-P1 Eca-Mir-1-P3

Orthologues

Aae-Mir-1 Aca-Mir-1-P2 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P2 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P2 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P2 Cin-Mir-1 Cja-Mir-1-P2 Cli-Mir-1-P2 Cpi-Mir-1-P2 Cpo-Mir-1-P2 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P2 Dpu-Mir-1 Dre-Mir-1-P2a Dre-Mir-1-P2b Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Egr-Mir-1 Esc-Mir-1 Ete-Mir-1-P2 Gga-Mir-1-P2 Gja-Mir-1-P2e Gja-Mir-1-P2f Gmo-Mir-1-P2a Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Hsa-Mir-1-P2 Isc-Mir-1 Laf-Mir-1-P2 Lan-Mir-1 Lch-Mir-1-P2 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Loc-Mir-1-P2 Mal-Mir-1-P2a Mdo-Mir-1-P2 Mgi-Mir-1 Mml-Mir-1-P2 Mmr-Mir-1-P2 Mmu-Mir-1-P2 Mom-Mir-1 Mun-Mir-1-P2 Oan-Mir-1-P2 Obi-Mir-1 Ocu-Mir-1-P2 Ofu-Mir-1 Ovu-Mir-1 Pab-Mir-1-P2 Pau-Mir-1 Pbv-Mir-1-P2 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pma-Mir-1-o2 Pmi-Mir-1 Rno-Mir-1-P2 Rph-Mir-1 Sha-Mir-1-P2 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spt-Mir-1-P2 Spu-Mir-1 Sro-Mir-1 Tca-Mir-1 Tgu-Mir-1-P2 Tni-Mir-1-P2a Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xla-Mir-1-P2c Xla-Mir-1-P2d Xtr-Mir-1-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009167.1: 50837313-50837372 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P2)

Mir-1-P2 CM009167.1: 50837313-50837372 [+] UCSC Ensembl
Mir-133-P2-v1 CM009167.1: 50841421-50841479 [+] UCSC Ensembl
Mir-133-P2-v2 CM009167.1: 50841421-50841479 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGCUGGAGCCAAGACUGCUUCCCGAGGCCACAUGCUUCUUUAUAUCCCCAUACGGAUUACUUUGCUAUGGAAUGUAAGGAAGUGUGUGGUUUCUGCAAGUGCCUCUUCGCCAGCCCCAC

Get precursor sequence

Structure

        10          20        30        40        50          
AGGCUGGAGCCAAGACU--|   CCC                      CC     CGGAUU 
                   GCUU   GAGGCCACAUGCUUCUUUAUAU  CCAUA      \
                   UGAA   CUUUGGUGUGUGAAGGAAUGUA  GGUAU      A
CACCCCGACCGCUUCUCCG^   CGU                      A-     CGUUUC 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-1-P2_5p* (predicted)

mirBase accession

None

Sequence

0- ACAUGCUUCUUUAUAUCCCCAUA -23

Get sequence

Mature sequence

Eca-Mir-1-P2_3p

mirBase accession

MIMAT0013098

Sequence

38- UGGAAUGUAAGGAAGUGUGUGG -60

Get sequence