Mir-1-P2a

MirGeneDB ID

Dre-Mir-1-P2a

Family name

MIR-1 (all species)

Seed

GGAAUGU

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-206-1

Paralogues

Dre-Mir-1-P1 Dre-Mir-1-P2b Dre-Mir-1-P3

Orthologues

Aae-Mir-1 Aca-Mir-1-P2 Ami-Mir-1-P2 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P2 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P2 Cgi-Mir-1 Cin-Mir-1 Cli-Mir-1-P2 Cpi-Mir-1-P2 Cpo-Mir-1-P2 Cte-Mir-1 Dan-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P2 Dpu-Mir-1 Dsi-Mir-1 Dya-Mir-1 Esc-Mir-1 Ete-Mir-1-P2 Gga-Mir-1-P2 Gmo-Mir-1-P2a Hme-Mir-1 Hsa-Mir-1-P2 Isc-Mir-1 Lan-Mir-1 Lch-Mir-1-P2 Lgi-Mir-1 Loc-Mir-1-P2 Mal-Mir-1-P2a Mdo-Mir-1-P2 Mml-Mir-1-P2 Mmu-Mir-1-P2 Mun-Mir-1-P2 Oan-Mir-1-P2 Obi-Mir-1 Ocu-Mir-1-P2 Ovu-Mir-1 Pbv-Mir-1-P2 Pfl-Mir-1 Pma-Mir-1-o2 Pmi-Mir-1 Rno-Mir-1-P2 Sha-Mir-1-P2 Sko-Mir-1 Spt-Mir-1-P2 Spu-Mir-1 Tca-Mir-1 Tgu-Mir-1-P2 Tni-Mir-1-P2a Xbo-Mir-1 Xtr-Mir-1-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(danRer11)

chr20: 19544667-19544726 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P2a)

Mir-133-P2a-v1 chr20: 19543389-19543448 [-] UCSC Ensembl
Mir-133-P2a-v2 chr20: 19543389-19543448 [-] UCSC Ensembl
Mir-1-P2a chr20: 19544667-19544726 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAGGAAACUGAAUGUUGCCUCUUGUGAAGACAUGCUUCCUUAUAUGCCCAUAUUAAUGCUCAAGUUAUGGAAUGUAAGGAAGUGUGUGGUUUCAGGGGGAAAUUUGUCUACAGUAUCAA

Get precursor sequence

Structure

        10          20        30        40        50          
GAAGGAAACUGAAUGUUG--|      U  AG                GC     UUAAUG 
                    CCUCUUG GA  ACAUGCUUCCUUAUAU  CCAUA      \
                    GGGGGAC UU  UGUGUGAAGGAAUGUA  GGUAU      C
AACUAUGACAUCUGUUUAAA^      U  GG                A-     UGAACU 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-1-P2a_5p*

mirBase accession

MIMAT0031988

Sequence

0- ACAUGCUUCCUUAUAUGCCCAUA -23

Get sequence

Mature sequence

Dre-Mir-1-P2a_3p

mirBase accession

MIMAT0001866

Sequence

38- UGGAAUGUAAGGAAGUGUGUGG -60

Get sequence

Proposed targets

TargetScanFish: dre-miR-206