MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-1-P2a

Family name MIR-1 (all species)
Seed GGAAUGU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-206-1
Paralogues Dre-Mir-1-P1  Dre-Mir-1-P2b  Dre-Mir-1-P3 
Orthologues Aae-Mir-1  Aca-Mir-1-P2  Aga-Mir-1  Agr-Mir-1  Ami-Mir-1-P2  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Bta-Mir-1-P2  Cbr-Mir-1  Cel-Mir-1  Cfa-Mir-1-P2  Cin-Mir-1  Cja-Mir-1-P2  Cli-Mir-1-P2  Cpi-Mir-1-P2  Cpo-Mir-1-P2  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dno-Mir-1-P2  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Eca-Mir-1-P2  Egr-Mir-1  Esc-Mir-1  Ete-Mir-1-P2  Gga-Mir-1-P2  Gmo-Mir-1-P2a  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Hsa-Mir-1-P2  Isc-Mir-1  Laf-Mir-1-P2  Lan-Mir-1  Lch-Mir-1-P2  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Loc-Mir-1-P2  Mal-Mir-1-P2a  Mdo-Mir-1-P2  Mgi-Mir-1  Mml-Mir-1-P2  Mmr-Mir-1-P2  Mmu-Mir-1-P2  Mom-Mir-1  Mun-Mir-1-P2  Oan-Mir-1-P2  Obi-Mir-1  Ocu-Mir-1-P2  Ofu-Mir-1  Ovu-Mir-1  Pab-Mir-1-P2  Pau-Mir-1  Pbv-Mir-1-P2  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pma-Mir-1-o2  Pmi-Mir-1  Rno-Mir-1-P2  Rph-Mir-1  Sha-Mir-1-P2  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spt-Mir-1-P2  Spu-Mir-1  Sro-Mir-1  Tca-Mir-1  Tgu-Mir-1-P2  Tni-Mir-1-P2a  Tur-Mir-1  War-Mir-1  Xbo-Mir-1  Xtr-Mir-1-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr20: 19544667-19544726 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1-P2a)		 Mir-133-P2a-v1 chr20: 19543389-19543448 [-] UCSC Ensembl
Mir-133-P2a-v2 chr20: 19543389-19543448 [-] UCSC Ensembl
Mir-1-P2a chr20: 19544667-19544726 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAGGAAACUGAAUGUUGCCUCUUGUGAAGACAUGCUUCCUUAUAUGCCCAUAUUAAUGCUCAAGUUAUGGAAUGUAAGGAAGUGUGUGGUUUCAGGGGGAAAUUUGUCUACAGUAUCAA
Get precursor sequence
Structure
        10          20        30        40        50          
GAAGGAAACUGAAUGUUG--|      U  AG                GC     UUAAUG 
                    CCUCUUG GA  ACAUGCUUCCUUAUAU  CCAUA      \
                    GGGGGAC UU  UGUGUGAAGGAAUGUA  GGUAU      C
AACUAUGACAUCUGUUUAAA^      U  GG                A-     UGAACU 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-1-P2a_5p*
mirBase accessionMIMAT0031988
Sequence 
0- ACAUGCUUCCUUAUAUGCCCAUA -23
Get sequence
Mature sequence

Dre-Mir-1-P2a_3p
mirBase accessionMIMAT0001866
Sequence 
38- UGGAAUGUAAGGAAGUGUGUGG -60
Get sequence
Proposed targets TargetScanFish: dre-miR-206