Mir-1-P2a

MirGeneDB ID

Gmo-Mir-1-P2a

Family name

MIR-1 (all species)

Seed

GGAAUGU

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-206

Paralogues

Gmo-Mir-1-P1 Gmo-Mir-1-P3

Orthologues

Aae-Mir-1 Aca-Mir-1-P2 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P2 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P2 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P2 Cin-Mir-1 Cja-Mir-1-P2 Cli-Mir-1-P2 Cpi-Mir-1-P2 Cpo-Mir-1-P2 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P2 Dpu-Mir-1 Dre-Mir-1-P2a Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Eca-Mir-1-P2 Egr-Mir-1 Esc-Mir-1 Ete-Mir-1-P2 Gga-Mir-1-P2 Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Hsa-Mir-1-P2 Isc-Mir-1 Laf-Mir-1-P2 Lan-Mir-1 Lch-Mir-1-P2 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Loc-Mir-1-P2 Mal-Mir-1-P2a Mdo-Mir-1-P2 Mgi-Mir-1 Mml-Mir-1-P2 Mmr-Mir-1-P2 Mmu-Mir-1-P2 Mom-Mir-1 Mun-Mir-1-P2 Oan-Mir-1-P2 Obi-Mir-1 Ocu-Mir-1-P2 Ofu-Mir-1 Ovu-Mir-1 Pab-Mir-1-P2 Pau-Mir-1 Pbv-Mir-1-P2 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pma-Mir-1-o2 Pmi-Mir-1 Rno-Mir-1-P2 Rph-Mir-1 Sha-Mir-1-P2 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spt-Mir-1-P2 Spu-Mir-1 Sro-Mir-1 Tca-Mir-1 Tgu-Mir-1-P2 Tni-Mir-1-P2a Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xtr-Mir-1-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_2491: 51191-51250 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P2a)

Mir-1-P2a GeneScaffold_2491: 51191-51250 [+] UCSC Ensembl
Mir-133-P2a-v1 GeneScaffold_2491: 53795-53854 [+] UCSC Ensembl
Mir-133-P2a-v2 GeneScaffold_2491: 53795-53854 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAGGAGGACCAGUUGUUGCUCCUUGUGAGGACAUGCUUCCUUAUAUGCCCAUAUGAAUACGCCAGUUAUGGAAUGUAAGGAAGUGUGUGGUCUCAAGGGGUCAGGAUCACCGCGGCAACA

Get precursor sequence

Structure

        10          20        30        40        50          
CAGGAGGACCAGUUGUU--|       U  GG                GC     UGAAUA 
                   GCUCCUUG GA  ACAUGCUUCCUUAUAU  CCAUA      \
                   UGGGGAAC CU  UGUGUGAAGGAAUGUA  GGUAU      C
ACAACGGCGCCACUAGGAC^       U  GG                A-     UGACCG 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Star sequence

Gmo-Mir-1-P2a_5p*

mirBase accession

MIMAT0044198

Sequence

0- ACAUGCUUCCUUAUAUGCCCAUA -23

Get sequence

Mature sequence

Gmo-Mir-1-P2a_3p

mirBase accession

MIMAT0044199

Sequence

38- UGGAAUGUAAGGAAGUGUGUGG -60

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