MirGeneDB 2.1
MirGeneDB ID

Tni-Mir-1-P2a

Family name MIR-1 (all species)
Seed GGAAUGU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-1-P1  Tni-Mir-1-P3 
Orthologues Aae-Mir-1  Aca-Mir-1-P2  Ami-Mir-1-P2  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Bta-Mir-1-P2  Cbr-Mir-1  Cel-Mir-1  Cfa-Mir-1-P2  Cgi-Mir-1  Cin-Mir-1  Cli-Mir-1-P2  Cpi-Mir-1-P2  Cpo-Mir-1-P2  Cte-Mir-1  Dan-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dno-Mir-1-P2  Dpu-Mir-1  Dre-Mir-1-P2a  Dsi-Mir-1  Dya-Mir-1  Esc-Mir-1  Ete-Mir-1-P2  Gga-Mir-1-P2  Gmo-Mir-1-P2a  Hme-Mir-1  Hsa-Mir-1-P2  Isc-Mir-1  Lan-Mir-1  Lch-Mir-1-P2  Lgi-Mir-1  Loc-Mir-1-P2  Mal-Mir-1-P2a  Mdo-Mir-1-P2  Mml-Mir-1-P2  Mmu-Mir-1-P2  Mun-Mir-1-P2  Oan-Mir-1-P2  Obi-Mir-1  Ocu-Mir-1-P2  Ovu-Mir-1  Pbv-Mir-1-P2  Pfl-Mir-1  Pma-Mir-1-o2  Pmi-Mir-1  Rno-Mir-1-P2  Sha-Mir-1-P2  Sko-Mir-1  Spt-Mir-1-P2  Spu-Mir-1  Tca-Mir-1  Tgu-Mir-1-P2  Xbo-Mir-1  Xtr-Mir-1-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 14: 5699806-5699865 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGAGAAUCCUGUUGUUGCCCCUUGUAAGGACAUGCUUCCUUAUAUCCCCAUAUUAAUACACCACUUAUGGAAUGUAAGGAAGUGUGUGGUUACGAGGAGGACACGAACGCCCAGCCGAA
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Structure
        10         20         30        40        50          
CUGAGAAUCCUGUUGUUG-  -|       GG                CC     UUAAUA 
                   CC CCUUGUAA  ACAUGCUUCCUUAUAU  CCAUA      \
                   GG GGAGCAUU  UGUGUGAAGGAAUGUA  GGUAU      C
AAGCCGACCCGCAAGCACA  A^       GG                A-     UCACCA 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-1-P2a_5p* (predicted)
mirBase accessionNone
Sequence 
0- ACAUGCUUCCUUAUAUCCCCAUA -23
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Mature sequence

Tni-Mir-1-P2a_3p
mirBase accessionNone
Sequence 
38- UGGAAUGUAAGGAAGUGUGUGG -60
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