MirGeneDB 2.1

MirGeneDB ID

Spt-Mir-1-P2

Family name MIR-1 (all species)
Seed GGAAUGU
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-1-P1  Spt-Mir-1-P3  Spt-Mir-1-P4 
Orthologues Aae-Mir-1  Aca-Mir-1-P2  Ami-Mir-1-P2  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Bta-Mir-1-P2  Cbr-Mir-1  Cel-Mir-1  Cfa-Mir-1-P2  Cgi-Mir-1  Cin-Mir-1  Cli-Mir-1-P2  Cpi-Mir-1-P2  Cpo-Mir-1-P2  Cte-Mir-1  Dan-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dno-Mir-1-P2  Dpu-Mir-1  Dre-Mir-1-P2a  Dre-Mir-1-P2b  Dsi-Mir-1  Dya-Mir-1  Esc-Mir-1  Ete-Mir-1-P2  Gga-Mir-1-P2  Gja-Mir-1-P2e  Gja-Mir-1-P2f  Gmo-Mir-1-P2a  Hme-Mir-1  Hsa-Mir-1-P2  Isc-Mir-1  Lan-Mir-1  Lch-Mir-1-P2  Lgi-Mir-1  Loc-Mir-1-P2  Mal-Mir-1-P2a  Mdo-Mir-1-P2  Mml-Mir-1-P2  Mmu-Mir-1-P2  Mun-Mir-1-P2  Oan-Mir-1-P2  Obi-Mir-1  Ocu-Mir-1-P2  Ovu-Mir-1  Pbv-Mir-1-P2  Pfl-Mir-1  Pma-Mir-1-o2  Pmi-Mir-1  Rno-Mir-1-P2  Sha-Mir-1-P2  Sko-Mir-1  Spu-Mir-1  Tca-Mir-1  Tgu-Mir-1-P2  Tni-Mir-1-P2a  Xbo-Mir-1  Xla-Mir-1-P2c  Xla-Mir-1-P2d  Xtr-Mir-1-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01009246.1: 3251540-3251599 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGACAGAAGGACCGAUUUCUCUUUGAGAUGACAUGCUUCUUUAUAUCCCCAUAUGAAUUAAAUUGCUAUGGAAUGUAAGGAAGUGUGUGGUUUCAGGGGGACAAGCACUGCCUUCUUGCA
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Structure
        10          20        30        40        50          
UGACAGAAGGACCGAUU--|           G                CC     UGAAUU 
                   UCUCUUUGAGAU ACAUGCUUCUUUAUAU  CCAUA      \
                   AGGGGGACUUUG UGUGUGAAGGAAUGUA  GGUAU      A
ACGUUCUUCCGUCACGAAC^           G                A-     CGUUAA 
.       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Spt-Mir-1-P2_5p* (predicted)

mirBase accessionNone
Sequence
0- ACAUGCUUCUUUAUAUCCCCAUA -23
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Mature sequence

Spt-Mir-1-P2_3p (predicted)

mirBase accessionNone
Sequence
38- UGGAAUGUAAGGAAGUGUGUGG -60
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