MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-1-P2f

Family name MIR-1 (all species)
Seed GGAAUGU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-1-P1  Gja-Mir-1-P2e  Gja-Mir-1-P3  Gja-Mir-1-P4c  Gja-Mir-1-P4d 
Orthologues Aae-Mir-1  Aca-Mir-1-P2  Aga-Mir-1  Agr-Mir-1  Ami-Mir-1-P2  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Bta-Mir-1-P2  Cbr-Mir-1  Cel-Mir-1  Cfa-Mir-1-P2  Cin-Mir-1  Cja-Mir-1-P2  Cli-Mir-1-P2  Cpi-Mir-1-P2  Cpo-Mir-1-P2  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dno-Mir-1-P2  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Eca-Mir-1-P2  Egr-Mir-1  Esc-Mir-1  Ete-Mir-1-P2  Gga-Mir-1-P2  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Hsa-Mir-1-P2  Isc-Mir-1  Laf-Mir-1-P2  Lan-Mir-1  Lch-Mir-1-P2  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Loc-Mir-1-P2  Mdo-Mir-1-P2  Mgi-Mir-1  Mml-Mir-1-P2  Mmr-Mir-1-P2  Mmu-Mir-1-P2  Mom-Mir-1  Mun-Mir-1-P2  Oan-Mir-1-P2  Obi-Mir-1  Ocu-Mir-1-P2  Ofu-Mir-1  Ovu-Mir-1  Pab-Mir-1-P2  Pau-Mir-1  Pbv-Mir-1-P2  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pma-Mir-1-o2  Pmi-Mir-1  Rno-Mir-1-P2  Rph-Mir-1  Sha-Mir-1-P2  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spt-Mir-1-P2  Spu-Mir-1  Sro-Mir-1  Tca-Mir-1  Tgu-Mir-1-P2  Tur-Mir-1  War-Mir-1  Xbo-Mir-1  Xtr-Mir-1-P2 
Node of Origin (locus) G. japonicus
Node of Origin (family) Bilateria
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015198665.1: 1004-1063 [-]
Precursor
(pre-Mir +30nt flank)
GAGAAAAGACCAGUUUCUCCUUUUGAGGCGACAUGCUUCUUUAUAUCCCCAUAUGAAUUAUACAGCUAUGGAAUGUAAGGAAGUGUGUGGUUUCGGGGAGAUGACCGUCCACACGGCCGU
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Structure
        10            20        30        40        50          
GAGAAAAGACCAGUUUC----|   UU      G                CC     UGAAUU 
                     UCCU  UGAGGC ACAUGCUUCUUUAUAU  CCAUA      \
                     AGGG  GCUUUG UGUGUGAAGGAAUGUA  GGUAU      A
UGCCGGCACACCUGCCAGUAG^   --      G                A-     CGACAU 
.       110       100          90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Gja-Mir-1-P2f_5p*
mirBase accessionNone
Sequence 
0- ACAUGCUUCUUUAUAUCCCCAUA -23
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Mature sequence

Gja-Mir-1-P2f_3p
mirBase accessionNone
Sequence 
38- UGGAAUGUAAGGAAGUGUGUGG -60
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