MirGeneDB 2.1
MirGeneDB ID

Gja-Mir-1-P4d

Family name MIR-1 (all species)
Seed GGAAUGU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-1-P1  Gja-Mir-1-P2e  Gja-Mir-1-P2f  Gja-Mir-1-P3  Gja-Mir-1-P4c 
Orthologues Aae-Mir-1  Aca-Mir-1-P4  Ami-Mir-1-P4  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Cbr-Mir-1  Cel-Mir-1  Cgi-Mir-1  Cin-Mir-1  Cli-Mir-1-P4  Cmi-Mir-1-P4  Cpi-Mir-1-P4  Cte-Mir-1  Dan-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Esc-Mir-1  Gga-Mir-1-P4  Hme-Mir-1  Isc-Mir-1  Lan-Mir-1  Lch-Mir-1-P4  Lgi-Mir-1  Mun-Mir-1-P4  Oan-Mir-1-P4  Obi-Mir-1  Ovu-Mir-1  Pbv-Mir-1-P4  Pfl-Mir-1  Pma-Mir-1-o4  Pmi-Mir-1  Sko-Mir-1  Spt-Mir-1-P4  Spu-Mir-1  Sto-Mir-1-P4  Tca-Mir-1  Tgu-Mir-1-P4  Xbo-Mir-1  Xtr-Mir-1-P4 
Node of Origin (locus) G. japonicus
Node of Origin (family) Bilateria
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015167551.1: 363813-363875 [-]
Precursor
(pre-Mir +30nt flank)
UUCUUUCUUCCCUCCCUCCCUCCCGAGCAUACAUACUUCUUUAUAUACCCAUAUGGAGUCGGUUGGCGUUAUGGAAUGUUAAGAAGUAUGUAUCAUUGGGUUGGGAUCUUUGCCUAGAAUGGU
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Structure
        10         20         30        40        50        60 
UUCUUUCUUCCCUCCCU-   U-|    GC             U    AC     UGGAGUC 
                  CCC  CCCGA  AUACAUACUUCUU AUAU  CCAUA       G
                  GGG  GGGUU  UAUGUAUGAAGAA UGUA  GGUAU       G
UGGUAAGAUCCGUUUCUA   UU^    AC             U    A-     UGCGGUU 
 120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
To
Star sequence

Gja-Mir-1-P4d_5p* (predicted)
mirBase accessionNone
Sequence 
0- ACAUACUUCUUUAUAUACCCAUA -23
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Mature sequence

Gja-Mir-1-P4d_3p
mirBase accessionNone
Sequence 
41- UGGAAUGUUAAGAAGUAUGUAU -63
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