MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-1-P4

Family name MIR-1 (all species)
Seed GGAAUGU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-1-P1  Lch-Mir-1-P2  Lch-Mir-1-P3 
Orthologues Aae-Mir-1  Aca-Mir-1-P4  Aga-Mir-1  Agr-Mir-1  Ami-Mir-1-P4  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Cbr-Mir-1  Cel-Mir-1  Cin-Mir-1  Cli-Mir-1-P4  Cmi-Mir-1-P4  Cpi-Mir-1-P4  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Egr-Mir-1  Esc-Mir-1  Gga-Mir-1-P4  Gja-Mir-1-P4c  Gja-Mir-1-P4d  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Isc-Mir-1  Lan-Mir-1  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Mgi-Mir-1  Mom-Mir-1  Mun-Mir-1-P4  Oan-Mir-1-P4  Obi-Mir-1  Ofu-Mir-1  Ovu-Mir-1  Pau-Mir-1  Pbv-Mir-1-P4  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pma-Mir-1-o4  Pmi-Mir-1  Rph-Mir-1  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spt-Mir-1-P4  Spu-Mir-1  Sro-Mir-1  Sto-Mir-1-P4  Tca-Mir-1  Tgu-Mir-1-P4  Tur-Mir-1  War-Mir-1  Xbo-Mir-1  Xla-Mir-1-P4a  Xla-Mir-1-P4b  Xtr-Mir-1-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)		 JH126588.1: 1227790-1227852 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CCCACCCCUCCCAAAACACACCUCAGGAGCACAUACUUCUUCAUAUGCCCAUAUGGAAUAAUCCCCGGUUAUGGAAUGUUAAGAAGUAUGUAUUUAUGGGGUGAAAUUACUGCAGAGCUUCAA
Get precursor sequence
Structure
        10          20        30        40        50        60 
CCCACCCCUCCCAAAACA--|      G   C           C    GC     UGGAAUA 
                    CACCUCA GAG ACAUACUUCUU AUAU  CCAUA       A
                    GUGGGGU UUU UGUAUGAAGAA UGUA  GGUAU       U
AACUUCGAGACGUCAUUAAA^      A   A           U    A-     UGGCCCC 
 120       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Lch-Mir-1-P4_5p* (predicted)
mirBase accessionNone
Sequence 
0- ACAUACUUCUUCAUAUGCCCAUA -23
Get sequence
Mature sequence

Lch-Mir-1-P4_3p (predicted)
mirBase accessionNone
Sequence 
41- UGGAAUGUUAAGAAGUAUGUAU -63
Get sequence