MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-1-o4

Family name MIR-1 (all species)
Seed GGAAUGU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-1c
Paralogues Pma-Mir-1-o1  Pma-Mir-1-o2  Pma-Mir-1-o3 
Orthologues Aae-Mir-1  Aca-Mir-1-P4  Aga-Mir-1  Agr-Mir-1  Ami-Mir-1-P4  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Cbr-Mir-1  Cel-Mir-1  Cin-Mir-1  Cli-Mir-1-P4  Cmi-Mir-1-P4  Cpi-Mir-1-P4  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Egr-Mir-1  Esc-Mir-1  Gga-Mir-1-P4  Gja-Mir-1-P4c  Gja-Mir-1-P4d  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Isc-Mir-1  Lan-Mir-1  Lch-Mir-1-P4  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Mgi-Mir-1  Mom-Mir-1  Mun-Mir-1-P4  Oan-Mir-1-P4  Obi-Mir-1  Ofu-Mir-1  Ovu-Mir-1  Pau-Mir-1  Pbv-Mir-1-P4  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pmi-Mir-1  Rph-Mir-1  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spt-Mir-1-P4  Spu-Mir-1  Sro-Mir-1  Sto-Mir-1-P4  Tca-Mir-1  Tgu-Mir-1-P4  Tur-Mir-1  War-Mir-1  Xbo-Mir-1  Xla-Mir-1-P4a  Xla-Mir-1-P4b  Xtr-Mir-1-P4 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046111.1: 10594887-10594948 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACCACCACCACCGCUCACCCUGCCAAGGGCACGUACUUCUUUGUAUUGCCAUACGGAUGUGCUGUAGCUAUGGAAUGUAAAGAAGUAUGUACCCUGGGCAGGGCUCGCAGCGCCACGCCAAG
Get precursor sequence
Structure
        10          20        30        40        50        60 
ACCACCACCACCGCUCA--|      A    C                 G     CGGAUGU 
                   CCCUGCC AGGG ACGUACUUCUUUGUAUU CCAUA       \
                   GGGACGG UCCC UGUAUGAAGAAAUGUAA GGUAU       G
GAACCGCACCGCGACGCUC^      G    A                 -     CGAUGUC 
120       110       100        90        80         70
Deep sequencing
Go to detailed chart
CommentThere are two snps between the assembled genome and the miRBase entry.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-1-o4_5p*
mirBase accessionMIMAT0019367
Sequence 
0- ACGUACUUCUUUGUAUUGCCAUA -23
Get sequence
Mature sequence

Pma-Mir-1-o4_3p
mirBase accessionMIMAT0019368
Sequence 
40- UGGAAUGUAAAGAAGUAUGUAC -62
Get sequence