Mir-1-P4a

MirGeneDB ID

Xla-Mir-1-P4a

Family name

MIR-1 (all species)

Seed

GGAAUGU

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-1b

Paralogues

Xla-Mir-1-P1a Xla-Mir-1-P1b Xla-Mir-1-P2c Xla-Mir-1-P2d Xla-Mir-1-P3a Xla-Mir-1-P3b Xla-Mir-1-P4b

Orthologues

Aae-Mir-1 Aca-Mir-1-P4 Ami-Mir-1-P4 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Cbr-Mir-1 Cel-Mir-1 Cgi-Mir-1 Cin-Mir-1 Cli-Mir-1-P4 Cmi-Mir-1-P4 Cpi-Mir-1-P4 Cte-Mir-1 Dan-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dpu-Mir-1 Dsi-Mir-1 Dya-Mir-1 Esc-Mir-1 Gga-Mir-1-P4 Hme-Mir-1 Isc-Mir-1 Lan-Mir-1 Lch-Mir-1-P4 Lgi-Mir-1 Mun-Mir-1-P4 Oan-Mir-1-P4 Obi-Mir-1 Ovu-Mir-1 Pbv-Mir-1-P4 Pfl-Mir-1 Pma-Mir-1-o4 Pmi-Mir-1 Sko-Mir-1 Spt-Mir-1-P4 Spu-Mir-1 Sto-Mir-1-P4 Tca-Mir-1 Tgu-Mir-1-P4 Xbo-Mir-1 Xtr-Mir-1-P4

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030726.1: 79594590-79594650 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P4a)

Mir-133-P4a NC_030726.1: 79594175-79594232 [-] UCSC Ensembl
Mir-1-P4a NC_030726.1: 79594590-79594650 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUCAAUGCCUUUGAUAUCGGUCUUUAGGGCACAUACUUCUUUAUAUGCCCAUACUGAAUGCCAAUGCUAUGGAAUGUUAAGAAGUAUGUAACCUAAGGUUGCCUUUUCAGCUGGGACGCAG

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Structure

        10        20          30        40        50        60
UUCAAUGCCUUUGAUAUC   --|      GC           U    GC     CUGAAU 
                  GGU  CUUUAGG  ACAUACUUCUU AUAU  CCAUA      G
                  CCG  GGAAUCC  UGUAUGAAGAA UGUA  GGUAU      C
GACGCAGGGUCGACUUUU   UU^      AA           U    A-     CGUAAC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	He	Re	St	St	St	St

Star sequence

Xla-Mir-1-P4a_5p*

mirBase accession

None

Sequence

0- ACAUACUUCUUUAUAUGCCCAUA -23

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Mature sequence

Xla-Mir-1-P4a_3p

mirBase accession

MIMAT0011135

Sequence

39- UGGAAUGUUAAGAAGUAUGUAA -61

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