MirGeneDB 3.0

MirGeneDB ID

Gga-Mir-1-P4

Family name MIR-1 (all species)
Seed GGAAUGU
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-1b
Paralogues Gga-Mir-1-P1  Gga-Mir-1-P2  Gga-Mir-1-P3 
Orthologues Aae-Mir-1  Aca-Mir-1-P4  Aga-Mir-1  Agr-Mir-1  Ami-Mir-1-P4  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Cbr-Mir-1  Cel-Mir-1  Cin-Mir-1  Cli-Mir-1-P4  Cmi-Mir-1-P4  Cpi-Mir-1-P4  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Egr-Mir-1  Esc-Mir-1  Gja-Mir-1-P4c  Gja-Mir-1-P4d  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Isc-Mir-1  Lan-Mir-1  Lch-Mir-1-P4  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Mgi-Mir-1  Mom-Mir-1  Mun-Mir-1-P4  Oan-Mir-1-P4  Obi-Mir-1  Ofu-Mir-1  Ovu-Mir-1  Pau-Mir-1  Pbv-Mir-1-P4  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pma-Mir-1-o4  Pmi-Mir-1  Rph-Mir-1  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spt-Mir-1-P4  Spu-Mir-1  Sro-Mir-1  Sto-Mir-1-P4  Tca-Mir-1  Tgu-Mir-1-P4  Tur-Mir-1  War-Mir-1  Xbo-Mir-1  Xla-Mir-1-P4a  Xla-Mir-1-P4b  Xtr-Mir-1-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Gallus_gallus.GRCg6a)
23: 4489739-4489801 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1-P4)
Mir-1-P4 23: 4489739-4489801 [+] UCSC Ensembl
Mir-133-P4-v1 23: 4489890-4489946 [+] UCSC Ensembl
Mir-133-P4-v2 23: 4489890-4489946 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGUGCCCGCUGCCUCUCCCUCCCAACCCUACAUACUUCUUCAUAUGCCCAUAUGGAGUCGGCCGGCGUUAUGGAAUGUUAAGAAGUAUGUAUCCUCGGGCUGGGACCCCCACGCUGGGACCC
Get precursor sequence
Structure
        10        20             30        40        50        60 
CUGUGCCCGCUGCCUCUCCCU    A   -----|           C    GC     UGGAGUC 
                     CCCA CCC     UACAUACUUCUU AUAU  CCAUA       G
                     GGGU GGG     AUGUAUGAAGAA UGUA  GGUAU       G
CCCAGGGUCGCACCCCCA---    C   CUCCU^           U    A-     UGCGGCC 
 120       110          100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-1-P4_5p*

mirBase accessionMIMAT0026536
Sequence
0- ACAUACUUCUUCAUAUGCCCAUA -23
Get sequence
Proposed targets TargetScanVert: gga-miR-1b-5p
miRDB: MIMAT0026536
Mature sequence

Gga-Mir-1-P4_3p

mirBase accessionMIMAT0001175
Sequence
41- UGGAAUGUUAAGAAGUAUGUAU -63
Get sequence
Proposed targets TargetScanVert: gga-miR-1b-3p
miRDB: MIMAT0001175