MirGeneDB 2.1

MirGeneDB ID

Gga-Mir-1-P1

Family name MIR-1 (all species)
Seed GGAAUGU
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-1a-2
Paralogues Gga-Mir-1-P2  Gga-Mir-1-P3  Gga-Mir-1-P4 
Orthologues Aae-Mir-1  Aca-Mir-1-P1  Ami-Mir-1-P1  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Bta-Mir-1-P1  Cbr-Mir-1  Cel-Mir-1  Cfa-Mir-1-P1  Cgi-Mir-1  Cin-Mir-1  Cli-Mir-1-P1  Cmi-Mir-1-P1  Cpi-Mir-1-P1  Cpo-Mir-1-P1  Cte-Mir-1  Dan-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dno-Mir-1-P1  Dpu-Mir-1  Dre-Mir-1-P1  Dsi-Mir-1  Dya-Mir-1  Esc-Mir-1  Ete-Mir-1-P1  Gja-Mir-1-P1  Gmo-Mir-1-P1  Hme-Mir-1  Hsa-Mir-1-P1  Isc-Mir-1  Lan-Mir-1  Lch-Mir-1-P1  Lgi-Mir-1  Loc-Mir-1-P1  Mal-Mir-1-P1  Mdo-Mir-1-P1  Mml-Mir-1-P1  Mmu-Mir-1-P1  Mun-Mir-1-P1  Oan-Mir-1-P1  Obi-Mir-1  Ocu-Mir-1-P1  Ovu-Mir-1  Pbv-Mir-1-P1  Pfl-Mir-1  Pma-Mir-1-o1  Pmi-Mir-1  Rno-Mir-1-P1  Sha-Mir-1-P1  Sko-Mir-1  Spt-Mir-1-P1  Spu-Mir-1  Sto-Mir-1-P1  Tca-Mir-1  Tgu-Mir-1-P1  Tni-Mir-1-P1  Xbo-Mir-1  Xla-Mir-1-P1a  Xla-Mir-1-P1b  Xtr-Mir-1-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Gallus_gallus.GRCg6a)
2: 102518401-102518461 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1-P1)
Mir-133-P1-v1 2: 102515277-102515336 [-] UCSC Ensembl
Mir-133-P1-v2 2: 102515277-102515336 [-] UCSC Ensembl
Mir-1-P1 2: 102518401-102518461 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAGCAACUCUACAUGUACCUGCUCAGAGCACAUACUUCUUUAUGUACCCAUAUGAACAUACAAUGCUAUGGAAUGUAAAGAAGUAUGUAUUUUUGGCAGGCGCAGAACGACCAGUAAGAG
Get precursor sequence
Structure
        10          20        30        40        50        60
UGAGCAACUCUACAUGUA--|     C    C                AC     UGAACA 
                    CCUGCU AGAG ACAUACUUCUUUAUGU  CCAUA      U
                    GGACGG UUUU UGUAUGAAGAAAUGUA  GGUAU      A
GAGAAUGACCAGCAAGACGC^     U    A                A-     CGUAAC 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-1-P1_5p*

mirBase accessionMIMAT0026510
Sequence
0- ACAUACUUCUUUAUGUACCCAUA -23
Get sequence
Proposed targets TargetScanVert: gga-miR-1a-2-5p
miRDB: MIMAT0026510
Mature sequence

Gga-Mir-1-P1_3p

mirBase accessionMIMAT0001127
Sequence
39- UGGAAUGUAAAGAAGUAUGUAU -61
Get sequence
Proposed targets TargetScanVert: gga-miR-1a-3p
miRDB: MIMAT0001127