Mir-1-P1

MirGeneDB ID

Gga-Mir-1-P1

Family name

MIR-1 (all species)

Seed

GGAAUGU

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-1a-2

Paralogues

Gga-Mir-1-P2 Gga-Mir-1-P3 Gga-Mir-1-P4

Orthologues

Aae-Mir-1 Aca-Mir-1-P1 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P1 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P1 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P1 Cin-Mir-1 Cja-Mir-1-P1 Cli-Mir-1-P1 Cmi-Mir-1-P1 Cpi-Mir-1-P1 Cpo-Mir-1-P1 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P1 Dpu-Mir-1 Dre-Mir-1-P1 Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Eca-Mir-1-P1 Egr-Mir-1 Esc-Mir-1 Ete-Mir-1-P1 Gja-Mir-1-P1 Gmo-Mir-1-P1 Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Hsa-Mir-1-P1 Isc-Mir-1 Laf-Mir-1-P1 Lan-Mir-1 Lch-Mir-1-P1 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Loc-Mir-1-P1 Mal-Mir-1-P1 Mdo-Mir-1-P1 Mgi-Mir-1 Mml-Mir-1-P1 Mmr-Mir-1-P1 Mmu-Mir-1-P1 Mom-Mir-1 Mun-Mir-1-P1 Neu-Mir-1-P1 Oan-Mir-1-P1 Obi-Mir-1 Ocu-Mir-1-P1 Ofu-Mir-1 Ovu-Mir-1 Pab-Mir-1-P1 Pau-Mir-1 Pbv-Mir-1-P1 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pma-Mir-1-o1 Pmi-Mir-1 Rno-Mir-1-P1 Rph-Mir-1 Sha-Mir-1-P1 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spt-Mir-1-P1 Spu-Mir-1 Sro-Mir-1 Sto-Mir-1-P1 Tca-Mir-1 Tgu-Mir-1-P1 Tni-Mir-1-P1 Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xla-Mir-1-P1a Xla-Mir-1-P1b Xtr-Mir-1-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

2: 102518401-102518461 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P1)

Mir-133-P1-v1 2: 102515277-102515336 [-] UCSC Ensembl
Mir-133-P1-v2 2: 102515277-102515336 [-] UCSC Ensembl
Mir-1-P1 2: 102518401-102518461 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGAGCAACUCUACAUGUACCUGCUCAGAGCACAUACUUCUUUAUGUACCCAUAUGAACAUACAAUGCUAUGGAAUGUAAAGAAGUAUGUAUUUUUGGCAGGCGCAGAACGACCAGUAAGAG

Get precursor sequence

Structure

        10          20        30        40        50        60
UGAGCAACUCUACAUGUA--|     C    C                AC     UGAACA 
                    CCUGCU AGAG ACAUACUUCUUUAUGU  CCAUA      U
                    GGACGG UUUU UGUAUGAAGAAAUGUA  GGUAU      A
GAGAAUGACCAGCAAGACGC^     U    A                A-     CGUAAC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-1-P1_5p*

mirBase accession

MIMAT0026510

Sequence

0- ACAUACUUCUUUAUGUACCCAUA -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-1a-2-5p
miRDB: MIMAT0026510

Mature sequence

Gga-Mir-1-P1_3p

mirBase accession

MIMAT0001127

Sequence

39- UGGAAUGUAAAGAAGUAUGUAU -61

Get sequence

Proposed targets

TargetScanVert: gga-miR-1a-3p
miRDB: MIMAT0001127